Evidence map›Paper›PMID 20091074›Full record

ArticleExtremophiles : life under extreme conditions2010

Diversity of Haloquadratum and other haloarchaea in three, geographically distant, Australian saltern crystallizer ponds.

Dickson Oh, Kate Porter, Brendan Russ, David Burns, Mike Dyall-Smith

Abstract read
In one paragraph

Article in Extremophiles : life under extreme conditions, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
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  4. Review
  5. Assessment of diversity of archaeal communities in Algerian chott.Extremophiles : life under extreme conditions · 2022
    Article
  6. Review
  7. Article
  8. Article
  9. Article
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  11. Article
  12. The PL6-Family Plasmids ofFrontiers in microbiology · 2018
    Article
  13. Article
  14. Article
  15. Article
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  17. Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dickson Oh5/9 Waterman Terrace, Mitchell Park, SA, 5043, Australia.
Kate Porter
Brendan Russ
David Burns
Mike Dyall-Smith

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Haloquadratum walsbyi is frequently a dominant member of the microbial communities in hypersaline waters. 16S rRNA gene sequences indicate that divergence within this species is very low but relatively few sites have been examined, particularly in the southern hemisphere. The diversity of Haloquadratum was examined in three coastal, but geographically distant saltern crystallizer ponds in Australia, using both culture-independent and culture-dependent methods. Two 97%-OTU, comprising Haloquadratum- and Halorubrum-related sequences, were shared by all three sites, with the former OTU representing about 40% of the sequences recovered at each site. Sequences 99.5% identical to that of Hqr. walsbyi C23(T) were present at all three sites and, overall, 98% of the Haloquadratum-related sequences displayed <or=2% divergence from that of the type strain. While haloarchaeal diversity at each site was relatively low (9-16 OTUs), seven phylogroups (clones and/or isolates) and 4 different clones showed <or=90% sequence identity to classified taxa, and appear to represent novel genera. Six of these branched together in phylogenetic tree reconstructions, forming a clade (MSP8-clade) whose members were only distantly related to classified taxa. Such sequences have only rarely been previously detected but were found at all three Australian crystallizers.

Indexed as

BiodiversityAustraliaBase SequenceCrystallizationDNA PrimersEcosystemEuryarchaeotaFresh WaterGenes, ArchaealGenetic VariationHalobacteriaceaeHalorubrumMolecular Sequence DataPhylogenyRNA, ArchaealRNA, Ribosomal, 16SDNA PrimersRNA, ArchaealRNA, Ribosomal, 16S

Identifiers

PMID20091074
PMCPMC2832888

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.