Evidence map›Paper›PMID 20090957›Full record

ArticlePloS one2010

Enhanced binding of poly(ADP-ribose)polymerase-1 and Ku80/70 to the ITGA2 promoter via an extended cytosine-adenosine repeat.

Yann Cheli, Shirley A Williams, Robert Ballotti, Diane J Nugent, Thomas J Kunicki

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Mitigation of oxygen-induced retinopathy in α2β1 integrin-deficient mice.Investigative ophthalmology & visual science · 2014
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yann CheliThe Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California, United States of America.
Shirley A Williams
Robert Ballotti
Diane J Nugent
Thomas J Kunicki
Children's Hospital of Orange County · USScripps Research Institute · USUniversité Côte d'Azur · FR

Funding

Mouse Genes that Regulate Hemostasis and/or ThrombosisR01HL086904 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI KUNICKI, THOMAS J. · 2008 to 2011
$1.8M
Molecular Genetics of Integrin Collagen ReceptorsR01HL075821 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI KUNICKI, THOMAS J. · 2004 to 2007
$1.8M
NHLBI NIH HHS HL075821NHLBI NIH HHS HL086904NHLBI NIH HHS R01 HL075821NHLBI NIH HHS R01 HL086904
6 · The paper itself

Abstract

backgroundWe have identified a cytosine-adenosine (CA) repeat length polymorphism in the 5'-regulatory region of the human integrin alpha2 gene ITGA2 that begins at -605. Our objective was to establish the contribution of this polymorphism to the regulation of integrin alpha2beta1 expression, which is known to vary several-fold among normal individuals, and to investigate the underlying mechanism(s). METHODOLOGY/PRINCIPAL

findingsIn combination with the SNP C-52T, previously identified by us as a binding site for the transcription factor Sp1, four ITGA2 haplotypes can be distinguished, in the order in which they enhance ITGA2 transcription: (CA)(12)/-52C>(CA)(11)/-52C>(CA)(11)/-52T>(CA)(10)/-52T. By DNA affinity chromatography and chromatin immunoprecipitation (ChIP) assays, we show that poly (ADP-ribose)polymerase-1 (PARP-1) and Ku80/70 bind specifically and with enhanced affinity to the longer (CA)(12) repeat alleles. CONCLUSIONS/SIGNIFICANCE: The increased binding of PARP-1 and Ku80/70, known components of transcription co-activator complexes, to the longer (CA)(12) alleles of ITGA2 coincides with enhanced alpha2beta1 expression. The most likely explanation for these findings is that PARP-1 and Ku80/70 contribute to the transcriptional regulation of ITGA2. These observations provide new insight into the mechanisms(s) underlying haplotype-dependent variability in integrin alpha2beta1 expression in human platelets and other cells.

Indexed as

Repetitive Sequences, Nucleic AcidAdenosineCell LineChromatography, AffinityCytosineHumansIntegrin alpha2Poly(ADP-ribose) PolymerasesPolymorphism, Single NucleotideProtein BindingAdenosineCytosineIntegrin alpha2ITGA2B protein, humanPoly(ADP-ribose) Polymerases

Identifiers

PMID20090957
PMCPMC2806922
OpenAlexW2115011865

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.