Evidence map›Paper›PMID 20090923›Full record

ArticleMolecular vision2010

Expression profiles during dedifferentiation in newt lens regeneration revealed by expressed sequence tags.

Nobuyasu Maki, John Martinson, Osamu Nishimura, Hiroshi Tarui, Jaroslaw Meller, Panagiotis A Tsonis, Kiyokazu Agata

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 41 citations in OpenAlex.

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  15. Cell signaling pathways in vertebrate lens regeneration.Current topics in microbiology and immunology · 2013
    Review
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  19. Article
  20. Molecular and cellular aspects of amphibian lens regeneration.Progress in retinal and eye research · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Nobuyasu MakiCenter for Developmental Biology, RIKEN Kobe, Kobe, Japan.
John Martinson
Osamu Nishimura
Hiroshi Tarui
Jaroslaw Meller
Panagiotis A Tsonis
Kiyokazu Agata
Kyoto University of Education · JP

Funding

REPRODUCTIVE AND DEVELOPMENTAL TOXICOLOGY RESEARCHP30ES006096 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 1992 to 2022
$35.4M
GENE REGULATION IN LENS REGENERATIONR01EY010540 · NEI · UNIVERSITY OF DAYTON · PI TSONIS, PANAGIOTIS A · 1995 to 2013
$3.3M
NEI NIH HHS EY10540NEI NIH HHS R01 EY010540NIEHS NIH HHS P30 ES006096NIEHS NIH HHS P30-ES006096
6 · The paper itself

Abstract

purposeThe adult newt can regenerate lens from pigmented epithelial cells (PECs) of the dorsal iris via dedifferentiation. The purpose of this research is to obtain sequence resources for a newt lens regeneration study and to obtain insights of dedifferentiation at the molecular level.

methodsmRNA was purified from iris during dedifferentiation and its cDNA library was constructed. From the cDNA library 10,449 clones were sequenced and analyzed.

resultsFrom 10,449 reads, 780 contigs and 1,666 singlets were annotated. The presence of several cancer- and apoptosis-related genes during newt dedifferentiation was revealed. Moreover, several candidate genes, which might participate in reprogramming during dedifferentiation, were also found.

conclusionsThe expression of cancer- and apoptosis-related genes could be hallmarks during dedifferentiation. The expression sequence tag (EST) resource is useful for the future study of newt dedifferentiation, and the sequence information is available in GenBank (accession numbers; FS290155-FS300559).

Indexed as

Gene Expression ProfilingAnimalsApoptosisCell DedifferentiationCellular ReprogrammingExpressed Sequence TagsGene Expression RegulationIrisLens, CrystallineNeoplasmsRegenerationSalamandridaeSequence Analysis, DNA

Identifiers

PMID20090923
PMCPMC2807617
OpenAlexW2127626473

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.