Evidence map›Paper›PMID 20090211›Full record

ArticleJournal of genetics2009

A comprehensive, sensitive and economical approach for the detection of mutations in the RB1 gene in retinoblastoma.

Vidya Latha Parsam, Chitra Kannabiran, Santosh Honavar, Geeta K Vemuganti, Mohammad Javed Ali

Abstract read
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In one paragraph

Article in Journal of genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genetics of primary intraocular tumors.Ocular immunology and inflammation · 2012
    Review
  12. Article
  13. Orbital retinoblastoma: Present status and future challenges - A review.Saudi journal of ophthalmology : official journal of the Saudi Ophthalmological Society · 2011
    Article
  14. Epidemiology and Rb1 gene of retinoblastoma.International journal of ophthalmology · 2011
    Article
  15. Article
  16. RB1 gene mutations in retinoblastoma and its clinical correlation.Saudi journal of ophthalmology : official journal of the Saudi Ophthalmological Society · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Vidya Latha ParsamKallam Anji Reddy Molecular Genetics Laboratory, Hyderabad Eye Research Foundation, L. V. Prasad Eye Institute, Hyderabad, India.
Chitra Kannabiran
Santosh Honavar
Geeta K Vemuganti
Mohammad Javed Ali
L V Prasad Eye Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retinoblastoma (Rb) is the most common primary intraocular malignancy in children. It is brought about by the mutational inactivation of both alleles of RB1 gene in the developing retina. To identify the RB1 mutations, we analysed 74 retinoblastoma patients by screening the exons and the promoter region of RB1. The strategy used was to detect large deletions/duplications by fluorescent quantitative multiplex PCR; small deletions/insertions by fluorescent genotyping of RB1 alleles, and point mutations by PCR-RFLP and sequencing. Genomic DNA from the peripheral blood leucocytes of 74 Rb patients (53 with bilateral Rb, 21 with unilateral Rb; 4 familial cases) was screened for mutations. Recurrent mutations were identified in five patients with bilateral Rb, large deletions in 11 patients (nine with bilateral Rb and two with unilateral Rb), small deletions/insertions were found in 12 patients all with bilateral Rb, and point mutations in 26 patients (14 nonsense, six splice site, five substitution and one silent change). Three mutations were associated with variable expressivity of the disease in different family members. Using this method, the detection rates achieved in patients with bilateral Rb were 44/53 (83%) and with unilateral Rb, 5/21 (23.8%). This approach may be feasible for clinical genetic testing and counselling of patients.

Indexed as

MutationAdultChildChild, PreschoolCodon, NonsenseDNA Mutational AnalysisExonsFeasibility StudiesGene DeletionGene DuplicationGenetic TestingHumansMiddle AgedMutagenesis, InsertionalMutation, MissensePolymerase Chain ReactionCodon, NonsenseRetinoblastoma ProteinRNA Splice Sites

Identifiers

PMID20090211
OpenAlexW2078416547

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.