Evidence map›Paper›PMID 20089863›Full record

ArticleThe Journal of biological chemistry2010

Structure of the antibiotic resistance factor spectinomycin phosphotransferase from Legionella pneumophila.

Desiree H Fong, Christopher T Lemke, Jiyoung Hwang, Bing Xiong, Albert M Berghuis

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 40 citations in OpenAlex.

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  10. Structural and kinetic characterization of (The Journal of biological chemistry · 2018
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  13. Review
  14. Prospects for circumventing aminoglycoside kinase mediated antibiotic resistance.Frontiers in cellular and infection microbiology · 2013
    Review
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  16. Article
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  20. Aminoglycoside modifying enzymes.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Desiree H FongDepartment of Biochemistry, McGill University, Montreal, Quebec H3G 1Y6.
Christopher T LemkeDepartment of Microbiology and Immunology, McGill University, Montreal, Quebec H3A 2B4, Canada.
Jiyoung HwangDepartment of Biochemistry, McGill University, Montreal, Quebec H3G 1Y6.
Bing XiongDepartment of Microbiology and Immunology, McGill University, Montreal, Quebec H3A 2B4, Canada.
Albert M BerghuisDepartment of Biochemistry, McGill University, Montreal, Quebec H3G 1Y6; Department of Microbiology and Immunology, McGill University, Montreal, Quebec H3A 2B4, Canada. Electronic address: albert.berghuis@mcgill.ca.
McGill University · CA

Funding

Canadian Institutes of Health Research MOP-13107
6 · The paper itself

Abstract

Aminoglycoside phosphotransferases (APHs) constitute a diverse group of enzymes that are often the underlying cause of aminoglycoside resistance in the clinical setting. Several APHs have been extensively characterized, including the elucidation of the three-dimensional structure of two APH(3') isozymes and an APH(2'') enzyme. Although many APHs are plasmid-encoded and are capable of inactivating numerous 2-deoxystreptmaine aminoglycosides with multiple regiospecificity, APH(9)-Ia, isolated from Legionella pneumophila, is an unusual enzyme among the APH family for its chromosomal origin and its specificity for a single non-2-deoxystreptamine aminoglycoside substrate, spectinomycin. We describe here the crystal structures of APH(9)-Ia in its apo form, its binary complex with the nucleotide, AMP, and its ternary complex bound with ADP and spectinomycin. The structures reveal that APH(9)-Ia adopts the bilobal protein kinase-fold, analogous to the APH(3') and APH(2'') enzymes. However, APH(9)-Ia differs significantly from the other two types of APH enzymes in its substrate binding area and that it undergoes a conformation change upon ligand binding. Moreover, kinetic assay experiments indicate that APH(9)-Ia has stringent substrate specificity as it is unable to phosphorylate substrates of choline kinase or methylthioribose kinase despite high structural resemblance. The crystal structures of APH(9)-Ia demonstrate and expand our understanding of the diversity of the APH family, which in turn will facilitate the development of new antibiotics and inhibitors.

Indexed as

Drug Resistance, MicrobialAnti-Bacterial AgentsBacterial ProteinsBinding SitesCrystallography, X-RayKineticsLegionella pneumophilaLigandsModels, ChemicalModels, MolecularMolecular ConformationPhosphorylationPhosphotransferases (Alcohol Group Acceptor)PhylogenyProtein IsoformsProtein Structure, TertiaryAnti-Bacterial AgentsBacterial ProteinsLigandsPhosphotransferases (Alcohol Group Acceptor)Protein Isoformsspectinomycin phosphotransferase

Identifiers

PMID20089863
PMCPMC2843205
OpenAlexW2146910234

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.