Evidence map›Paper›PMID 20087624›Full record

ArticleThe European physical journal. E, Soft matter2010

Symmetry of electrostatic interaction between pyrophosphate DNA molecules.

V L Golo, E I Kats, S A Kuznetsova, Yu S Volkov

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Article in The European physical journal. E, Soft matter, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

V L GoloDepartment of Mechanics and Mathematics, the Lomonosov Moscow State University, Russia. voislav.golo@gmail.com
E I Kats
S A Kuznetsova
Yu S Volkov

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We study chiral electrostatic interaction between artificial ideal homopolymer DNA-like molecules in which a number of phosphate groups of the sugar-phosphate backbone are exchanged for the pyrophosphate ones. We employ a model in which the DNA is considered as a one-dimensional lattice of dipoles and charges corresponding to base pairs and (pyro)phosphate groups, respectively. The interaction between molecules of the DNA is described by a pair potential U of electrostatic forces between the two sets of dipoles and charges belonging to respective lattices describing the molecules. Minima of the potential U indicate orientational ordering of the molecules and thus liquid crystalline phases of the DNA. We use numerical methods for finding the set of minima in conjunction with symmetries verified by the potential U . The symmetries form a non-commutative group of 8th order, S . Using the group S we suggest a classification of liquid crystalline phases of the DNA, which allows several cholesteric phases, that is polymorphism. Pyrophosphate forms of the DNA could clarify the role played by charges in their liquid crystalline phases, and open experimental research, important for nano-technological and bio-medical applications.

Indexed as

Base PairingComputer SimulationCrystallizationDiphosphatesDNALiquid CrystalsModels, ChemicalStatic ElectricityTemperatureDiphosphatesDNA

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.