Evidence map›Paper›PMID 20087413›Full record

ArticlePLoS biology2010

The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coat-like proteins.

Rachel Santarella-Mellwig, Josef Franke, Andreas Jaedicke, Mátyás Gorjánácz, Ulrike Bauer, Aidan Budd, Iain W Mattaj, Damien P Devos

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 147 citations in OpenAlex.

  1. Microbe Profile:Microbiology (Reading, England) · 2026
    Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Clustering protein functional families at large scale with hierarchical approaches.Protein science : a publication of the Protein Society · 2024
    Article
  7. Applied and environmental microbiology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Commentary: Manifold Routes to a Nucleus.Frontiers in microbiology · 2019
    Article
  16. Review
  17. Article
  18. PVCbase: an integrated web resource for the PVC bacterial proteomes.Database : the journal of biological databases and curation · 2018
    Article
  19. Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Rachel Santarella-MellwigEuropean Molecular Biology Laboratory, Heidelberg, Germany.
Josef Franke
Andreas Jaedicke
Mátyás Gorjánácz
Ulrike Bauer
Aidan Budd
Iain W Mattaj
Damien P Devos
European Molecular Biology Laboratory · DERockefeller University · US

Funding

Studying the structure of the NPC core scaffold at high resolutionF32GM082029 · NIGMS · ROCKEFELLER UNIVERSITY · PI FRANKE, JOSEF DEREK · 2007 to 2008
$101k
NIGMS NIH HHS F32 GM082029
6 · The paper itself

Abstract

The development of the endomembrane system was a major step in eukaryotic evolution. Membrane coats, which exhibit a unique arrangement of beta-propeller and alpha-helical repeat domains, play key roles in shaping eukaryotic membranes. Such proteins are likely to have been present in the ancestral eukaryote but cannot be detected in prokaryotes using sequence-only searches. We have used a structure-based detection protocol to search all proteomes for proteins with this domain architecture. Apart from the eukaryotes, we identified this protein architecture only in the Planctomycetes-Verrucomicrobia-Chlamydiae (PVC) bacterial superphylum, many members of which share a compartmentalized cell plan. We determined that one such protein is partly localized at the membranes of vesicles formed inside the cells in the planctomycete Gemmata obscuriglobus. Our results demonstrate similarities between bacterial and eukaryotic compartmentalization machinery, suggesting that the bacterial PVC superphylum contributed significantly to eukaryogenesis.

Indexed as

BacteriaBacterial ProteinsBiological EvolutionCell CompartmentationMembrane ProteinsPhylogenyProtein Structure, TertiaryProteomeSequence Analysis, ProteinBacterial ProteinsMembrane ProteinsProteome

Identifiers

PMID20087413
PMCPMC2799638
OpenAlexW2089222249

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.