Evidence map›Paper›PMID 20087403›Full record

ArticleEuropean journal of human genetics : EJHG2010

Tag-SNP analysis of the GFI1-EVI5-RPL5-FAM69 risk locus for multiple sclerosis.

Antonio Alcina, Oscar Fernández, Juan Ramón Gonzalez, Antonio Catalá-Rabasa, María Fedetz, Dorothy Ndagire, Laura Leyva, Miguel Guerrero, Carmen Arnal, Concepción Delgado and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  10. SPOCK3, a risk gene for adult ADHD and personality disorders.European archives of psychiatry and clinical neuroscience · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Antonio AlcinaInstituto de Parasitología y Biomedicina López Neyra, Consejo Superior de Investigaciones Científicas, Granada, Spain.
Oscar Fernández
Juan Ramón Gonzalez
Antonio Catalá-Rabasa
María Fedetz
Dorothy Ndagire
Laura Leyva
Miguel Guerrero
Carmen Arnal
Concepción Delgado
Miguel Lucas
Guillermo Izquierdo
Fuencisla Matesanz
Instituto de Parasitología y Biomedicina "López - Neyra" · ESConsejo Superior de Investigaciones Científicas · ESHospital Universitario Virgen Macarena · ESCenter for Research in Environmental Epidemiology · ESHospital Universitario Virgen de las Nieves · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A recent genome-wide association study conducted by the International Multiple Sclerosis Genetic Consortium (IMSGC) identified, among others, a number of putative multiple sclerosis (MS) susceptibility variants at position 1p22. Twenty-one SNPs positively associated with MS were located at the GFI-EVI5-RPL5-FAM69A locus. In this study, we performed an analysis and fine mapping of this locus, genotyping eight Tag-SNPs in 732 MS patients and 974 controls from Spain. We observed an association with MS in three of eight Tag-SNPs: rs11804321 (P=0.008, OR=1.29; 95% CI=1.08-1.54), rs11808092 (P=0.048, OR=1.19; 95% CI=1.03-1.39) and rs6680578 (P=0.0082, OR=1.23; 95% CI=1.07-1.41). After correcting for multiple comparisons and using logistic regression analysis to test the addition of each SNP to the most associated SNPs, we observed that rs11804321 alone was sufficient to model the association. This Tag-SNP captures two SNPs in complete linkage disequilibrium (r(2)=1), both located within the 17th intron of the EVI5 gene. Our findings agree with the corresponding data of the recent IMSGC study and present new genetic evidence that points to EVI5 as a factor of susceptibility to MS.

Indexed as

Genetic Predisposition to DiseaseAdultCase-Control StudiesCell Cycle ProteinsDNA-Binding ProteinsFemaleGenetic LociGenome-Wide Association StudyGTPase-Activating ProteinsHumansLinkage DisequilibriumMaleMultiple SclerosisNuclear ProteinsPolymorphism, Single NucleotideRegression AnalysisCell Cycle ProteinsDNA-Binding ProteinsEVI5 protein, humanGFI1 protein, humanGTPase-Activating ProteinsNuclear Proteinsribosomal protein L5, humanRibosomal ProteinsTranscription Factors

Identifiers

PMID20087403
PMCPMC2987353
OpenAlexW2122380662

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.