Evidence map›Paper›PMID 20086098›Full record

ArticleMolecular and cellular biology2010

Mammalian SWI/SNF--a subunit BAF250/ARID1 is an E3 ubiquitin ligase that targets histone H2B.

Xuan Shirley Li, Patrick Trojer, Tatsushi Matsumura, Jessica E Treisman, Naoko Tanese

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 113 citations in OpenAlex.

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  10. The Emerging Role of Chromatin Remodeling Complexes in Ovarian Cancer.International journal of molecular sciences · 2022
    Review
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xuan Shirley LiDepartment of Microbiology, Howard Hughes Medical Institute, NYU School of Medicine, 550 First Avenue, New York, NY 10016, USA.
Patrick Trojer
Tatsushi Matsumura
Jessica E Treisman
Naoko Tanese
New York University · US

Funding

GRADUATE PROGRAM IN CELLULAR &MOLECULAR BIOLOGYT32GM007238 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI RIFKIN, DANIEL B · 1985 to 2013
$2.7M
FUNCTION OF THE DROSOPHILA EYELID PROTEINR01GM056131 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TREISMAN, JESSICA E · 1998 to 2007
$1.9M
FUNCTIONS OF THE DROSOPHILA EYELID PROTEINR55GM056131 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TREISMAN, JESSICA E · 1997 to 1997
–
Howard Hughes Medical InstituteNIGMS NIH HHS GM007238NIGMS NIH HHS GM56131NIGMS NIH HHS R01 GM056131NIGMS NIH HHS T32 GM007238
6 · The paper itself

Abstract

The mammalian SWI/SNF chromatin-remodeling complex facilitates DNA access by transcription factors and the transcription machinery. The characteristic member of human SWI/SNF-A is BAF250/ARID1, of which there are two isoforms, BAF250a/ARID1a and BAF250b/ARID1b. Here we report that BAF250b complexes purified from mammalian cells contain elongin C (Elo C), a BC box binding component of an E3 ubiquitin ligase. BAF250b was found to have a BC box motif, associate with Elo C in a BC box-dependent manner, and, together with cullin 2 and Roc1, assemble into an E3 ubiquitin ligase. The BAF250b BC box mutant protein was unstable in vivo and was autoubiquitinated in a manner similar to that for the VHL BC box mutants. The discovery that BAF250 is part of an E3 ubiquitin ligase adds an enzymatic function to the chromatin-remodeling complex SWI/SNF-A. The immunopurified BAF250b E3 ubiquitin ligase was found to target histone H2B at lysine 120 for monoubiquitination in vitro. To date, all H2B monoubiquitination was attributed to the human homolog of yeast Bre1 (RNF20/40). Mutation of Drosophila osa, the homolog of BAF250, or depletion of BAF250 by RNA interference (RNAi) in cultured human cells resulted in global decreases in monoubiquitinated H2B, implicating BAF250 in the cross talk of histone modifications.

Indexed as

AnimalsCarrier ProteinsCell LineCullin ProteinsDNA-Binding ProteinsDrosophila melanogasterElonginHistonesHumansNuclear ProteinsProteasome Endopeptidase ComplexProtein SubunitsRNA, Small InterferingTranscription FactorsUbiquitin-Protein LigasesARID1A protein, humanCarrier ProteinsCUL2 protein, humanCullin ProteinsDNA-Binding ProteinsELOC protein, humanElonginHistonesNuclear ProteinsProteasome Endopeptidase ComplexProtein SubunitsRBX1 protein, humanRNA, Small InterferingTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID20086098
PMCPMC2838063
OpenAlexW2172104904

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.