Evidence map›Paper›PMID 20084081›Full record

ArticleProstate cancer and prostatic diseases2010

Accurate prediction of repeat prostate biopsy outcomes by a mitochondrial DNA deletion assay.

K Robinson, J Creed, B Reguly, C Powell, R Wittock, D Klein, A Maggrah, L Klotz, R L Parr, G D Dakubo

Abstract read
PubMed Publisher
In one paragraph

Article in Prostate cancer and prostatic diseases, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
  2. Review
  3. Mitochondria in cancer.Cell stress · 2020
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Clinical and Novel Biomarkers in the Management of Prostate Cancer.Current treatment options in oncology · 2018
    Review
  9. Article
  10. Review
  11. Review
  12. Tissue-based biomarkers in prostate cancer.Expert review of precision medicine and drug development · 2017
    Article
  13. Article
  14. Article
  15. PSA and beyond: alternative prostate cancer biomarkers.Cellular oncology (Dordrecht, Netherlands) · 2016
    Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

K RobinsonGenesis Genomics, Thunder Bay, ON, Canada.
J Creed
B Reguly
C Powell
R Wittock
D Klein
A Maggrah
L Klotz
R L Parr
G D Dakubo
Ontario Genomics · CAHealth Sciences Centre · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several cancers are characterized by large-scale mtDNA deletions. We previously provided evidence that one of these deletions has potential utility in resolving false from true-negative prostate needle biopsies. This study was to assess the clinical value of this deletion in predicting re-biopsy outcomes. We used a quantitative polymerase chain reaction assay to measure the levels of the deletion in individual negative needle biopsies from 101 patients who had a repeat biopsy within a year with known outcomes. Using an empirically established cycle threshold (Ct) cutoff of 31, and the lowest Ct for each patient as diagnostic of prostate cancer, as well as the histopathologic diagnosis on second biopsy, we calculated the clinical performance of the deletion. The Ct cutoff at 31 gave a sensitivity and specificity of 84 and 54%, respectively, with the area under a receiver-operating characteristics curve of 0.749. The negative predictive value was 91%. The assay was able to predict the presence of a missed tumor in 17 out of 20 men a year before diagnosis. This ancillary test appears to identify men who do not require a repeat biopsy with a high degree of certainty. The results suggest that the majority of men with atypical small acinar proliferation have a concurrent missed tumor and therefore require close monitoring for early detection.

Indexed as

Biopsy, NeedleSequence DeletionDNA, MitochondrialFalse Negative ReactionsHumansMaleMiddle AgedPolymerase Chain ReactionProstateProstatic NeoplasmsDNA, Mitochondrial

Identifiers

PMID20084081
OpenAlexW2023595415

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.