Evidence map›Paper›PMID 20081032›Full record

ArticleJournal of bacteriology2010

Proteomic alterations explain phenotypic changes in Sinorhizobium meliloti lacking the RNA chaperone Hfq.

Lise Barra-Bily, Catherine Fontenelle, Gwenael Jan, Maud Flechard, Annie Trautwetter, Shree P Pandey, Graham C Walker, Carlos Blanco

Abstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. TheFrontiers in microbiology · 2022
    Article
  4. Review
  5. Article
  6. MostmSphere · 2018
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Functional analysis of the two cyclophilin isoforms of Sinorhizobium meliloti.World journal of microbiology & biotechnology · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Identifying and characterizing Hfq-RNA interactions.Methods (San Diego, Calif.) · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lise Barra-BilyInteractions Cellulaires et Moleculaires, DUALS, CNRS UMR 6026, Université de Rennes I, Campus de Beaulieu, 35042 Rennes Cedex, France.
Catherine Fontenelle
Gwenael Jan
Maud Flechard
Annie Trautwetter
Shree P Pandey
Graham C Walker
Carlos Blanco

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
MOLEULAR GENETICS OF RHIZOBIUM PLASMIDSR01GM031030 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALKER, GRAHAM C · 1985 to 2020
$8.6M
NIEHS NIH HHS P30 ES002109NIGMS NIH HHS GM31030NIGMS NIH HHS R01 GM031030
6 · The paper itself

Abstract

The ubiquitous bacterial RNA-binding protein Hfq is involved in stress resistance and pathogenicity. In Sinorhizobium meliloti, Hfq is essential for the establishment of symbiosis with Medicago sativa and for nitrogen fixation. A proteomic analysis identifies 55 proteins with significantly affected expression in the hfq mutant; most of them are involved in cell metabolism or stress resistance. Important determinants of oxidative stress resistance, such as CysK, Gsh, Bfr, SodC, KatB, KatC, and a putative peroxiredoxine (SMc00072), are downregulated in the hfq mutant. The hfq mutant is affected for H(2)O(2), menadione, and heat stress resistance. Part of these defects could result from the reductions of rpoE1, rpoE2, rpoE3, and rpoE4 expression levels in the hfq mutant. Some proteins required for efficient symbiosis are reduced in the hfq mutant, contributing to the drastic defect in nodulation observed in this mutant.

Indexed as

Gene Expression ProfilingProteomicsGene Expression Regulation, BacterialHost Factor 1 ProteinMedicago sativaMutationPhenotypeSinorhizobium melilotiSymbiosisHost Factor 1 Protein

Identifiers

PMID20081032
PMCPMC2832530

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.