Evidence map›Paper›PMID 20081031›Full record

ArticleJournal of bacteriology2010

The receiver domain of hybrid histidine kinase VirA: an enhancing factor for vir gene expression in Agrobacterium tumefaciens.

Arlene A Wise, Fang Fang, Yi-Han Lin, Fanglian He, David G Lynn, Andrew N Binns

Abstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Mechanistic Analysis of the VirA Sensor Kinase inFrontiers in microbiology · 2022
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Agrobacterium: nature's genetic engineer.Frontiers in plant science · 2014
    Article
  9. Article
  10. Article
  11. Engineering robust control of two-component system phosphotransfer using modular scaffolds.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Arlene A WiseDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104-6018, USA. wisea2@sas.upenn.edu
Fang Fang
Yi-Han Lin
Fanglian He
David G Lynn
Andrew N Binns
Emory University · USUniversity of Pennsylvania · US

Funding

CHEMICAL &GENETIC APPROACHES TO DEFINE CELL ACTIVATIONR01GM047369 · NIGMS · UNIVERSITY OF CHICAGO · PI LYNN, DAVID GILBERT · 1992 to 2005
$1.9M
NIGMS NIH HHS R01 GM047369NIGMS NIH HHS R01 GM47369
6 · The paper itself

Abstract

The plant pathogen Agrobacterium tumefaciens expresses virulence (vir) genes in response to chemical signals found at the site of a plant wound. VirA, a hybrid histidine kinase, and its cognate response regulator, VirG, regulate vir gene expression. The receiver domain at the carboxyl end of VirA has been described as an inhibitory element because its removal increased vir gene expression relative to that of full-length VirA. However, experiments that characterized the receiver region as an inhibitory element were performed in the presence of constitutively expressed virG. We show here that VirA's receiver domain is an activating factor if virG is expressed from its native promoter on the Ti plasmid. When virADeltaR was expressed from a multicopy plasmid, both sugar and the phenolic inducer were essential for vir gene expression. Replacement of wild-type virA on pTi with virADeltaR precluded vir gene induction, and the cells did not accumulate VirG or induce transcription of a virG-lacZ fusion in response to acetosyringone. These phenotypes were corrected if the virG copy number was increased. In addition, we show that the VirA receiver domain can interact with the VirG DNA-binding domain.

Indexed as

Agrobacterium tumefaciensBacterial ProteinsDNA, BacterialEscherichia coliGene Expression Regulation, BacterialNicotianaPlant LeavesPlant Tumor-Inducing PlasmidsProtein BindingProtein Structure, TertiaryTranscriptional ActivationVirulenceVirulence FactorsBacterial ProteinsDNA, BacterialVirulence Factors

Identifiers

PMID20081031
PMCPMC2832513
OpenAlexW2169860244

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.