Evidence map›Paper›PMID 20080739›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Consensus motif for integrin transmembrane helix association.

Bryan W Berger, Daniel W Kulp, Lisa M Span, Jessica L DeGrado, Paul C Billings, Alessandro Senes, Joel S Bennett, William F DeGrado

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Spiers Memorial Lecture: Analysis andFaraday discussions · 2021
    Article
  3. Mcl-1 and Bok transmembrane domains: Unexpected players in the modulation of apoptosis.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Roles of Membrane Domains in Integrin-Mediated Cell Adhesion.International journal of molecular sciences · 2020
    Review
  5. Unique transmembrane domain interactions differentially modulate integrin αvβ3 and αIIbβ3 function.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Article
  7. De novo designed transmembrane peptides activating the α5β1 integrin.Protein engineering, design & selection : PEDS · 2018
    Article
  8. Article
  9. Article
  10. Article
  11. Bax transmembrane domain interacts with prosurvival Bcl-2 proteins in biological membranes.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Structural Basis of p75 Transmembrane Domain Dimerization.The Journal of biological chemistry · 2016
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Bryan W BergerBiochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.
Daniel W Kulp
Lisa M Span
Jessica L DeGrado
Paul C Billings
Alessandro Senes
Joel S Bennett
William F DeGrado
University of Pennsylvania · US

Funding

Subcellular Mechanisms pf Platelet ActivationP01HL040387 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI BENNETT, JOEL S. · 1988 to 2018
$35.5M
STUDIES OF PLATELET ADHERENCE TO OSTEOPONTINP01HL062250 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 1999 to 2013
$28.4M
THE ROLE OF SEMA4D/CD100 AND ITS RECEPTORS IN PLATELET BIOLOGY AND THROMBOSISP50HL081012 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI BRASS, LAWRENCE · 2006 to 2010
$11.9M
BIOORGANIC MODELS FOR TRANSMEMBRANE PROTEINSR01GM060610 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 2000 to 2009
$2.2M
NHLBI NIH HHS HL40387NHLBI NIH HHS HL62250NHLBI NIH HHS HL81012NHLBI NIH HHS P01 HL040387NHLBI NIH HHS P01 HL062250NHLBI NIH HHS P50 HL081012NIGMS NIH HHS GM60610NIGMS NIH HHS R01 GM060610
6 · The paper itself

Abstract

Interactions between transmembrane (TM) helices play an important role in the regulation of diverse biological functions. For example, the TM helices of integrins are believed to interact heteromerically in the resting state; disruption of this interaction results in integrin activation and cellular adhesion. However, it has been difficult to demonstrate the specificity and affinity of the interaction between integrin TM helices and to relate them to the activation process. To examine integrin TM helix associations, we developed a bacterial reporter system and used it to define the sequence motif required for helix-helix interactions in the beta (1) and beta (3) integrin subfamilies. The helices interact in a novel three-dimensional motif, the "reciprocating large-small motif" that is also observed in the crystal structures of unrelated proteins. Modest but specific stabilization of helix associations is realized via packing of complementary small and large groups on neighboring helices. Mutations destabilizing this motif activate native, full-length integrins. Thus, this highly conserved dissociable motif plays a vital and widespread role as an on-off switch that can integrate with other control elements during integrin activation.

Indexed as

Amino Acid SequenceCell LineConsensus SequenceDimerizationDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsHumansIntegrin alpha ChainsIntegrin beta ChainsJurkat CellsModels, MolecularMolecular Sequence DataMutationNeoplasm ProteinsPeptide FragmentsDNA-Binding ProteinsEscherichia coli ProteinsIntegrin alpha ChainsIntegrin beta ChainsNeoplasm ProteinsPeptide FragmentsProtein Subunits

Identifiers

PMID20080739
PMCPMC2818961
OpenAlexW2044441652

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.