Evidence map›Paper›PMID 20080686›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

The structure of ribosome-lankacidin complex reveals ribosomal sites for synergistic antibiotics.

Tamar Auerbach, Inbal Mermershtain, Chen Davidovich, Anat Bashan, Matthew Belousoff, Itai Wekselman, Ella Zimmerman, Liqun Xiong, Dorota Klepacki, Kenji Arakawa and 3 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 74 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. 2-Amino-3-Chlorobenzoic Acid fromPharmaceuticals (Basel, Switzerland) · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Modular Approaches to Lankacidin Antibiotics.Journal of the American Chemical Society · 2020
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Ribosomal Antibiotics: Contemporary Challenges.Antibiotics (Basel, Switzerland) · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 3 countries.

Tamar AuerbachDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel.
Inbal Mermershtain
Chen Davidovich
Anat Bashan
Matthew Belousoff
Itai Wekselman
Ella Zimmerman
Liqun Xiong
Dorota Klepacki
Kenji Arakawa
Haruyasu Kinashi
Alexander S Mankin
Ada Yonath
Weizmann Institute of Science · ILUniversity of Illinois Chicago · USHiroshima University · JP

Funding

Novel Therapeutics for Bacillus anthracisU19AI056575 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI JOHNSON, MICHAEL E. · 2003 to 2007
$15.5M
CRYSTALLOGRAPHIC STUDIES ON RIBOSOMAL PARTICLESR01GM034360 · NIGMS · WEIZMANN INSTITUTE OF SCIENCE · PI YONATH, ADA E · 1985 to 2010
$2.2M
NIAID NIH HHS U19 AI056575NIAID NIH HHS U19 AI56575NIGMS NIH HHS GM34360NIGMS NIH HHS R01 GM034360
6 · The paper itself

Abstract

Crystallographic analysis revealed that the 17-member polyketide antibiotic lankacidin produced by Streptomyces rochei binds at the peptidyl transferase center of the eubacterial large ribosomal subunit. Biochemical and functional studies verified this finding and showed interference with peptide bond formation. Chemical probing indicated that the macrolide lankamycin, a second antibiotic produced by the same species, binds at a neighboring site, at the ribosome exit tunnel. These two antibiotics can bind to the ribosome simultaneously and display synergy in inhibiting bacterial growth. The binding site of lankacidin and lankamycin partially overlap with the binding site of another pair of synergistic antibiotics, the streptogramins. Thus, at least two pairs of structurally dissimilar compounds have been selected in the course of evolution to act synergistically by targeting neighboring sites in the ribosome. These results underscore the importance of the corresponding ribosomal sites for development of clinically relevant synergistic antibiotics and demonstrate the utility of structural analysis for providing new directions for drug discovery.

Indexed as

Anti-Bacterial AgentsBinding SitesCrystallography, X-RayDeinococcusDrug DiscoveryDrug SynergismErythromycinMacrolidesModels, MolecularMolecular StructureRibosomesRibosome Subunits, Large, BacterialAnti-Bacterial AgentsErythromycinkujimycin BlankacidinsMacrolides

Identifiers

PMID20080686
PMCPMC2804743
OpenAlexW2117916958

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.