Evidence map›Paper›PMID 20080102›Full record

ArticleJournal of molecular biology2010

Comparative analysis of membrane-associated fusion peptide secondary structure and lipid mixing function of HIV gp41 constructs that model the early pre-hairpin intermediate and final hairpin conformations.

Kelly Sackett, Matthew J Nethercott, Raquel F Epand, Richard M Epand, Douglas R Kindra, Yechiel Shai, David P Weliky

Abstract readComparative Study
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. RapidBiochemistry · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Magic angle spinning NMR of viruses.Progress in nuclear magnetic resonance spectroscopy · 2015
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. The three lives of viral fusion peptides.Chemistry and physics of lipids · 2014
    Review
  17. Article
  18. REDOR NMR for drug discovery.Bioorganic & medicinal chemistry letters · 2013
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kelly SackettDepartment of Chemistry, Michigan State University, East Lansing, MI 48824, USA.
Matthew J Nethercott
Raquel F Epand
Richard M Epand
Douglas R Kindra
Yechiel Shai
David P Weliky

Funding

Solid State NMR Studies of the HIV-1 Fusion PeptideR01AI047153 · NIAID · MICHIGAN STATE UNIVERSITY · PI WELIKY, DAVID P · 2001 to 2021
$5.6M
High Resolution Structure of the HIV gp41 ProteinF32AI080136 · NIAID · MICHIGAN STATE UNIVERSITY · PI SACKETT, KELLY · 2008 to 2010
$149k
CIHR MOP 86608NIAID NIH HHS F32 AI080136NIAID NIH HHS F32AI080136NIAID NIH HHS R01 AI047153NIAID NIH HHS R01AI047153
6 · The paper itself

Abstract

Fusion between viral and host cell membranes is the initial step of human immunodeficiency virus infection and is mediated by the gp41 protein, which is embedded in the viral membrane. The approximately 20-residue N-terminal fusion peptide (FP) region of gp41 binds to the host cell membrane and plays a critical role in fusion catalysis. Key gp41 fusion conformations include an early pre-hairpin intermediate (PHI) characterized by extended coiled-coil structure in the region C-terminal of the FP and a final hairpin state with compact six-helix bundle structure. The large "N70" (gp41 1-70) and "FP-Hairpin" constructs of the present study contained the FP and respectively modeled the PHI and hairpin conformations. Comparison was also made to the shorter "FP34" (gp41 1-34) fragment. Studies were done in membranes with physiologically relevant cholesterol content and in membranes without cholesterol. In either membrane type, there were large differences in fusion function among the constructs with little fusion induced by FP-Hairpin, moderate fusion for FP34, and very rapid fusion for N70. Overall, our findings support acceleration of gp41-induced membrane fusion by early PHI conformation and fusion arrest after folding to the final six-helix bundle structure. FP secondary structure at Leu7 of the membrane-associated constructs was probed by solid-state nuclear magnetic resonance and showed populations of molecules with either beta-sheet or helical structure with greater beta-sheet population observed for FP34 than for N70 or FP-Hairpin. The large differences in fusion function among the constructs were not obviously correlated with FP secondary structure. Observation of cholesterol-dependent FP structure for fusogenic FP34 and N70 and cholesterol-independent structure for non-fusogenic FP-Hairpin was consistent with membrane insertion of the FP for FP34 and N70 and with lack of insertion for FP-Hairpin. Membrane insertion of the FP may therefore be associated with the early PHI conformation and FP withdrawal with the final hairpin conformation.

Indexed as

Membrane FusionModels, MolecularAmino Acid SequenceBuffersCalorimetry, Differential ScanningCell MembraneCholesterolHIV Envelope Protein gp41HumansLipidsMagnetic Resonance SpectroscopyMolecular Sequence DataPeptidesProtein Structure, SecondaryProtein Structure, TertiaryRepetitive Sequences, Amino AcidBuffersCholesterolHIV Envelope Protein gp41LipidsPeptides

Identifiers

PMID20080102
PMCPMC2830311

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.