Evidence map›Paper›PMID 20077035›Full record

ArticleMolecular biotechnology2010

Characterization of a cryptic plasmid pD403 from Lactobacillus plantarum and construction of shuttle vectors based on its replicon.

Zhilan Sun, Jian Kong, Wentao Kong

Abstract read
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In one paragraph

Article in Molecular biotechnology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Zhilan SunState Key Laboratory of Microbial Technology, Shandong University, Jinan, China.
Jian Kong
Wentao Kong
Shandong University · CNState Key Laboratory of Microbial Technology

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A cryptic plasmid pD403 was isolated from Lactobacillus plantarum D403 derived from fermented dairy products. It was 2,791 bp in size with a G+C content of 37%. Nucleotide sequence analysis revealed two open reading frames, orf1 and orf2. ORF1 (318 amino acids) was identified as a replication protein (RepA). ORF2 (137 amino acids) shared 31% similarity with the transcriptional regulator of Ralstonia pickettii 12D. Functional investigation indicated that ORF2 (Tra) had the ability of improving the transformation efficiency. The origin of replication was predicted, suggesting that pD403 was a rolling-circle-replication (RCR) plasmid. An Escherichia coli/Lactobacillus shuttle vector pCD4032 was constructed based on the pD403 replicon, and proved to be successfully transformed into various lactobacilli including Lactobacillus casei, Lactobacillus plantarum, Lactobacillus fermentum, and Lactobacillus brevis. The transformation efficiencies were ranged from 1.3 x 10(2) to 7 x 10(4) transformants per microgram DNA. Furthermore, an expression vector pCD4033 was developed with the promoter of the lactate dehydrogenase from Lactobacillus delbrueckii 11842. The green fluorescent protein (gfp) as a reporter was expressed successfully in various lactobacilli tested, suggesting that the expression vector pCD4033 had the potential to be used as a molecular tool for heterologous gene cloning and expression in lactobacilli.

Indexed as

DNA, BacterialGenetic EngineeringGenetic VectorsLactiplantibacillus plantarumPlasmidsRNA Splice SitesDNA, BacterialRNA Splice Sites

Identifiers

PMID20077035
OpenAlexW2050893795

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.