Evidence map›Paper›PMID 20075989›Full record

ArticleEMBO reports2010

Regulation of antigen-receptor gene assembly in hagfish.

Natsuko Kishishita, Tatsuya Matsuno, Yoshimasa Takahashi, Hiroyuki Takaba, Hirofumi Nishizumi, Fumikiyo Nagawa

Abstract read
In one paragraph

Article in EMBO reports, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Characterization of Lamprey BAFF-like Gene: Evolutionary Implications.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Article
  6. Article
  7. Article
  8. Definition of a third VLR gene in hagfish.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  9. Lamprey immunity is far from primitive.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  10. Article
  11. Article
  12. Article
  13. VLR-based adaptive immunity.Annual review of immunology · 2012
    Review
  14. Design principles of adaptive immune systems.Nature reviews. Immunology · 2011
    Review
  15. The invention of lymphocytes.Current opinion in immunology · 2011
    Review
  16. Article
  17. Identification of a third variable lymphocyte receptor in the lamprey.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  18. The origins of vertebrate adaptive immunity.Nature reviews. Immunology · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Natsuko KishishitaDepartment of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.
Tatsuya Matsuno
Yoshimasa Takahashi
Hiroyuki Takaba
Hirofumi Nishizumi
Fumikiyo Nagawa

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Variable lymphocyte receptors (VLRs) are antigen receptors in the jawless vertebrates lamprey and hagfish. VLR genes are classified into VLRA and VLRB, and lymphocytes expressing VLRA are T-cell-like, whereas those expressing VLRB are B-cell-like in the sea lamprey. Diverse VLR genes are assembled somatically in lymphocytes; however, how the assembly is regulated is still largely unknown. Here, we analyse VLR gene assembly at the single-cell level in the inshore hagfish (Eptatretus burgeri). Each lymphocyte assembles and transcribes only one type of VLR gene, either VLRA or VLRB. In general, monoallelic assembly of VLR was observed, but diallelic assembly was found in some cases--in many of which, one allele was functional and the other was defective. In fact, all VLR-assembled lymphocytes contained at least one functional VLR gene. Together, these results indicate a feedback inhibition of VLR assembly and selection of VLR-positive lymphocytes.

Indexed as

AllelesAnimalsGene Expression RegulationGene RearrangementHagfishesImmunoglobulin Variable RegionModels, BiologicalReceptors, AntigenTranscription, GeneticImmunoglobulin Variable RegionReceptors, Antigen

Identifiers

PMID20075989
PMCPMC2828746

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.