Evidence map›Paper›PMID 20075921›Full record

ArticleNature2010

Structural basis for the photoconversion of a phytochrome to the activated Pfr form.

Andrew T Ulijasz, Gabriel Cornilescu, Claudia C Cornilescu, Junrui Zhang, Mario Rivera, John L Markley, Richard D Vierstra

Open access · greenAbstract read
In one paragraph

Article in Nature, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
27.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 138 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Light- and pH-dependent structural changes in cyanobacteriochrome AnPixJg2.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Plant Phytochromes and their Phosphorylation.International journal of molecular sciences · 2019
    Review
  13. Article
  14. Article
  15. Article
  16. Perception of the plant hormone ethylene: known-knowns and known-unknowns.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Andrew T UlijaszDepartment of Genetics and, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Gabriel Cornilescu
Claudia C Cornilescu
Junrui Zhang
Mario Rivera
John L Markley
Richard D Vierstra
University of Wisconsin–Madison · USUniversity of Kansas · US

Funding

Specialized Center for Eukaryotic Structural GenomicsU54GM074901 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2005 to 2009
$18.9M
WATER DISTRIB:PHYSICAL PROPERT:PIZZA &LMPS MOZZARELLA CHEESES:EARLY STAGE MATURP41RR002301 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 1985 to 2011
$13.0M
NCRR NIH HHS P41 RR002301NIGMS NIH HHS U54 GM074901
6 · The paper itself

Abstract

Phytochromes are a collection of bilin-containing photoreceptors that regulate numerous photoresponses in plants and microorganisms through their ability to photointerconvert between a red-light-absorbing, ground state (Pr) and a far-red-light-absorbing, photoactivated state (Pfr). Although the structures of several phytochromes as Pr have been determined, little is known about the structure of Pfr and how it initiates signalling. Here we describe the three-dimensional solution structure of the bilin-binding domain as Pfr, using the cyanobacterial phytochrome from Synechococcus OSB'. Contrary to predictions, light-induced rotation of the A pyrrole ring but not the D ring is the primary motion of the chromophore during photoconversion. Subsequent rearrangements within the protein then affect intradomain and interdomain contact sites within the phytochrome dimer. On the basis of our models, we propose that phytochromes act by propagating reversible light-driven conformational changes in the bilin to altered contacts between the adjacent output domains, which in most phytochromes direct differential phosphotransfer.

Indexed as

LightAmino AcidsBacterial ProteinsBile PigmentsBinding SitesMagnetic Resonance SpectroscopyModels, MolecularPhotoreceptors, MicrobialPhytochromeProtein KinasesProtein Structure, TertiaryRotationSynechococcusAmino AcidsBacterial ProteinsBile PigmentsCph1 phytochrome protein, bacteriaPhotoreceptors, MicrobialPhytochromeProtein Kinases

Identifiers

PMID20075921
PMCPMC2807988
OpenAlexW2044760715

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.