Evidence map›Paper›PMID 20075206›Full record

ArticleThe Journal of molecular diagnostics : JMD2010

Detecting 22q11.2 deletions by use of multiplex ligation-dependent probe amplification on DNA from neonatal dried blood spot samples.

Karina M Sørensen, Peter Agergaard, Charlotte Olesen, Paal S Andersen, Lars A Larsen, John R Ostergaard, Jan P Schouten, Michael Christiansen

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. The many lives of type IA topoisomerases.The Journal of biological chemistry · 2020
    Review
  8. Review
  9. Article
  10. Mapping 22q11.2 Gene Dosage Effects on Brain Morphometry.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
  11. Article
  12. 22q11.2 deletion syndrome.Nature reviews. Disease primers · 2015
    Review
  13. Developmental trajectories in 22q11.2 deletion.American journal of medical genetics. Part C, Seminars in medical genetics · 2015
    Review
  14. Article
  15. Article
  16. Discussing the psychiatric manifestations of 22q11.2 deletion syndrome: an exploration of clinical practice among medical geneticists.Genetics in medicine : official journal of the American College of Medical Genetics · 2013
    Article
  17. Article
  18. Transcription factor pathways and congenital heart disease.Current topics in developmental biology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Karina M SørensenDepartment of Clinical Biochemistry and Immunology 85/232, Statens Serum Institut, Artillerivej 5, 2300 Kbh. S, Denmark. kms@ssi.dk
Peter Agergaard
Charlotte Olesen
Paal S Andersen
Lars A Larsen
John R Ostergaard
Jan P Schouten
Michael Christiansen
Statens Serum Institut · DKAarhus University Hospital · DKMRC Holland (Netherlands) · NLRegionshospitalet Viborg · DKUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 22q11 deletion syndrome, which is caused by a 1.5- to 3.0-megabase hemizygous deletion in chromosome 22q11.2, has a prevalence of 1/2000 to 1/4000. However, the syndrome presents with highly variable phenotypes and thus may be underestimated among Danish newborns. To establish a true incidence of 22q11.2 deletions among certain manifestations, eg, congenital heart disease, on selected Danes, a multiplex ligation-dependant probe amplification (MLPA) analysis was designed. The analysis was planned to be performed on DNA extracted from dried blood spot samples (DBSS) obtained from Guthrie cards collected during neonatal screening programs. However, the DNA concentration necessary for a standard MLPA analysis (20 ng) could not be attained from DBSS, and a novel MLPA design was developed to permit for analysis on limited amounts of DNA (2 ng). A pilot study is reported here that validates the new MLPA design using nine patients diagnosed with the 22q11.2 deletion and 101 controls. All deletions were identified using DNA extracted from DBSS, and no copy number variations were detected in the controls, resulting in a specificity and sensitivity of 100%. It is thereby concluded that the novel MLPA probe design is successful and reliable using minimal amounts of DNA. This allows for use of DBSS samples in a retrospective study of 22q11.2 deletion among certain manifestations associated with DiGeorge Syndrome.

Indexed as

Chromosome DeletionInfant, NewbornChildChromosomes, Human, Pair 22DenmarkDNADNA Copy Number VariationsHumansMass ScreeningNucleic Acid Amplification TechniquesDNA

Identifiers

PMID20075206
PMCPMC2871720
OpenAlexW2030763722

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.