Evidence map›Paper›PMID 20070118›Full record

ArticleJournal of the American Chemical Society2010

Role of copper ion in regulating ligand binding in a myoglobin-based cytochrome C oxidase model.

Changyuan Lu, Xuan Zhao, Yi Lu, Denis L Rousseau, Syun-Ru Yeh

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. OACS catalysis · 2018
    Article
  3. Biochemical responses of the Protaetia brevitarsis Lewis larvae to subchronic copper exposure.Environmental science and pollution research international · 2018
    Article
  4. Design of Heteronuclear Metalloenzymes.Methods in enzymology · 2016
    Article
  5. Article
  6. Article
  7. Site-specific covalent attachment of heme proteins on self-assembled monolayers.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2012
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Changyuan LuDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Xuan Zhao
Yi Lu
Denis L Rousseau
Syun-Ru Yeh
Albert Einstein College of Medicine · USUniversity of Illinois Urbana-Champaign · US

Funding

DESIGNING HETERONUCLEAR METALLOENZYMESR01GM062211 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI LU, YI · 2001 to 2021
$5.1M
Catalytic Properties of Cytochrome OxidaseR01GM074982 · NIGMS · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI ROUSSEAU, DENIS L. · 2005 to 2009
$1.3M
NIGMS NIH HHS GM06221NIGMS NIH HHS GM074982NIGMS NIH HHS R01 GM062211NIGMS NIH HHS R01 GM074982
6 · The paper itself

Abstract

Cytochrome c oxidase (CcO), the terminal enzyme in the mitochondrial respiratory chain, catalyzes the four-electron reduction of dioxygen to water in a binuclear center comprised of a high-spin heme (heme a(3)) and a copper atom (Cu(B)) coordinated by three histidine residues. As a minimum model for CcO, a mutant of sperm whale myoglobin, named Cu(B)Mb, has been engineered, in which a copper atom is held in the distal heme pocket by the native E7 histidine and two nonnative histidine residues. In this work, the role of the copper in regulating ligand binding in Cu(B)Mb was investigated. Resonance Raman studies show that the presence of copper in CO-bound Cu(B)Mb leads to a CcO-like distal heme pocket. Stopped-flow data show that, upon the initiation of the CO binding reaction, the ligand first binds to the Cu(+); it subsequently transfers from Cu(+) to Fe(2+) in an intramolecular process, similar to that reported for CcO. The high CO affinity toward Cu(+) and the slow intramolecular CO transfer rate between Cu(+) and Fe(2+) in the Cu(B)Mb/Cu(+) complex are analogous to those in Thermus thermophilus CcO (TtCcO) but distinct from those in bovine CcO (bCcO). Additional kinetic studies show that, upon photolysis of the NO-bound Cu(B)Mb/Cu(+) complex, the photolyzed ligand transiently binds to Cu(+) and subsequently rebinds to Fe(2+), accounting for the 100% geminate recombination yield, similar to that found in TtCcO. The data demonstrate that the Cu(B)Mb/Cu(+) complex reproduces essential structural and kinetic features of CcO and that the complex is more akin to TtCcO than to bCcO.

Indexed as

AnimalsCarbon MonoxideCationsCattleCopperElectron Transport Complex IVLigandsModels, MolecularMutant ProteinsMyoglobinNitrogen OxidesPhotolysisProtein BindingProtein EngineeringSpectrum Analysis, RamanThermus thermophilusCarbon MonoxideCationsCopperElectron Transport Complex IVLigandsMutant ProteinsMyoglobinNitrogen Oxides

Identifiers

PMID20070118
PMCPMC3761084
OpenAlexW2018885210

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.