Evidence map›Paper›PMID 20068102›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2010

Identification of markers of taxane sensitivity using proteomic and genomic analyses of breast tumors from patients receiving neoadjuvant paclitaxel and radiation.

Joshua A Bauer, A Bapsi Chakravarthy, Jennifer M Rosenbluth, Deming Mi, Erin H Seeley, Nara De Matos Granja-Ingram, Maria G Olivares, Mark C Kelley, Ingrid A Mayer, Ingrid M Meszoely and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 1 pooled it
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 1 synthesis or guideline pooled it, 186 citations in OpenAlex.

  1. Pooled it
  2. Tumor histological subtyping determined by hormone receptors and HER2 status defines different pathological complete response and outcome to dose-dense neoadjuvant chemotherapy in breast cancer patients.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2014
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  12. Long Noncoding RNAs in Taxane Resistance of Breast Cancer.International journal of molecular sciences · 2023
    Review
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  16. Translocon-associated Protein Subunit SSR3 Determines and Predicts Susceptibility to Paclitaxel in Breast Cancer and Glioblastoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Joshua A BauerDepartments of Biochemistry, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
A Bapsi Chakravarthy
Jennifer M Rosenbluth
Deming Mi
Erin H Seeley
Nara De Matos Granja-Ingram
Maria G Olivares
Mark C Kelley
Ingrid A Mayer
Ingrid M Meszoely
Julie A Means-Powell
Kimberly N Johnson
Chiaojung Jillian Tsai
Gregory D Ayers
Melinda E Sanders
Robert J Schneider
Silvia C Formenti
Richard M Caprioli
Jennifer A Pietenpol
New York University · USVanderbilt University Medical Center · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
TISSUE CoreP50CA098131 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PARK, BEN HO, PIETENPOL, JENNIFER A · 2003 to 2024
$48.7M
Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
Spatial Analysis of Molecules in Tissue using MALDI-MSR01GM058008 · NIGMS · VANDERBILT UNIVERSITY · PI CAPRIOLI, RICHARD M · 1998 to 2015
$5.8M
VIRUSES, NUCLEIC ACIDS, GROWTH, AND CANCERT32CA009385 · NCI · VANDERBILT UNIVERSITY · PI RULEY, HENRY EARL · 1985 to 2007
$4.1M
P53 SIGNALING AND CELLULAR RESPONSE AFTER STRESSR01CA070856 · NCI · VANDERBILT UNIVERSITY · PI PIETENPOL, JENNIFER A · 1997 to 2010
$3.8M
p63 Signaling in Epithelial Cell Growth and CancerR01CA105436 · NCI · VANDERBILT UNIVERSITY · PI PIETENPOL, JENNIFER A · 2004 to 2014
$3.1M
Identification of druggable targets for triple-negative breast cancerF32CA138106 · NCI · VANDERBILT UNIVERSITY · PI BAUER, JOSHUA A. · 2009 to 2009
$50k
NCI NIH HHS CA009385NCI NIH HHS CA070856NCI NIH HHS CA105436NCI NIH HHS CA68485NCI NIH HHS F32 CA138106NCI NIH HHS P30 CA068485NCI NIH HHS P50 CA098131NCI NIH HHS P50 CA95131NCI NIH HHS R01 CA070856NCI NIH HHS R01 CA105436NCI NIH HHS T32 CA009385NIEHS NIH HHS ES00267NIEHS NIH HHS P30 ES000267NIGMS NIH HHS 5R01 GM58008-09NIGMS NIH HHS R01 GM058008
6 · The paper itself

Abstract

purposeTo identify molecular markers of pathologic response to neoadjuvant paclitaxel/radiation treatment, protein and gene expression profiling were done on pretreatment biopsies. EXPERIMENTAL

designPatients with high-risk, operable breast cancer were treated with three cycles of paclitaxel followed by concurrent paclitaxel/radiation. Tumor tissue from pretreatment biopsies was obtained from 19 of the 38 patients enrolled in the study. Protein and gene expression profiling were done on serial sections of the biopsies from patients that achieved a pathologic complete response (pCR) and compared to those with residual disease, non-pCR (NR).

resultsProteomic and validation immunohistochemical analyses revealed that alpha-defensins (DEFA) were overexpressed in tumors from patients with a pCR. Gene expression analysis revealed that MAP2, a microtubule-associated protein, had significantly higher levels of expression in patients achieving a pCR. Elevation of MAP2 in breast cancer cell lines led to increased paclitaxel sensitivity. Furthermore, expression of genes that are associated with the basal-like, triple-negative phenotype were enriched in tumors from patients with a pCR. Analysis of a larger panel of tumors from patients receiving presurgical taxane-based treatment showed that DEFA and MAP2 expression as well as histologic features of inflammation were all statistically associated with response to therapy at the time of surgery.

conclusionWe show the utility of molecular profiling of pretreatment biopsies to discover markers of response. Our results suggest the potential use of immune signaling molecules such as DEFA as well as MAP2, a microtubule-associated protein, as tumor markers that associate with response to neoadjuvant taxane-based therapy.

Indexed as

Biomarkers, PharmacologicalBreast NeoplasmsCarcinomaCombined Modality TherapyDrug Resistance, NeoplasmFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGenomicsHumansMetabolomeNeoadjuvant TherapyOligonucleotide Array Sequence AnalysisPaclitaxelProteomicsTaxoidsBiomarkers, PharmacologicalPaclitaxelTaxoids

Identifiers

PMID20068102
PMCPMC2892225
OpenAlexW2129778189

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.