Evidence map›Paper›PMID 20067623›Full record

ArticleBMC microbiology2010

New structural and functional defects in polyphosphate deficient bacteria: a cellular and proteomic study.

Cristian Varela, Cecilia Mauriaca, Alberto Paradela, Juan P Albar, Carlos A Jerez, Francisco P Chávez

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 44 citations in OpenAlex.

  1. The roles and synthesis of inorganic polyphosphate inbioRxiv : the preprint server for biology · 2026
    Article
  2. Article
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  7. Transcriptional Responses ofFrontiers in microbiology · 2021
    Article
  8. LeveragingFrontiers in microbiology · 2021
    Review
  9. Article
  10. Article
  11. Inorganic Polyphosphate Is Essential forFrontiers in cellular and infection microbiology · 2018
    Article
  12. Article
  13. Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Inorganic polyphosphates in extremophiles and their possible functions.Extremophiles : life under extreme conditions · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Cristian VarelaDepartment of Biology, Faculty of Sciences, Laboratory of Molecular Microbiology and Biotechnology & Millennium Institute of Cell Dynamics and Biotechnology, University of Chile, Las Palmeras 3425, Nuñoa, Santiago, Chile.
Cecilia Mauriaca
Alberto Paradela
Juan P Albar
Carlos A Jerez
Francisco P Chávez
Centro Nacional de Biotecnología · ESMillennium Institute for Integrative Biology · CLUniversity of Chile · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInorganic polyphosphate (polyP), a polymer of tens or hundreds of phosphate residues linked by ATP-like bonds, is found in all organisms and performs a wide variety of functions. PolyP is synthesized in bacterial cells by the actions of polyphosphate kinases (PPK1 and PPK2) and degraded by exopolyphosphatase (PPX). Bacterial cells with polyP deficiencies due to knocking out the ppk1 gene are affected in many structural and important cellular functions such as motility, quorum sensing, biofilm formation and virulence among others. The cause of this pleiotropy is not entirely understood.

resultsThe overexpression of exopolyphosphatase in bacteria mimicked some pleitropic defects found in ppk1 mutants. By using this approach we found new structural and functional defects in the polyP-accumulating bacteria Pseudomonas sp. B4, which are most likely due to differences in the polyP-removal strategy. Colony morphology phenotype, lipopolysaccharide (LPS) structure changes and cellular division malfunction were observed. Finally, we used comparative proteomics in order to elucidate the cellular adjustments that occurred during polyP deficiency in this bacterium and found some clues that helped to understand the structural and functional defects observed.

conclusionsThe results obtained suggest that during polyP deficiency energy metabolism and particularly nucleoside triphosphate (NTP) formation were affected and that bacterial cells overcame this problem by increasing the flux of energy-generating metabolic pathways such as tricarboxilic acid (TCA) cycle, beta-oxidation and oxidative phosphorylation and by reducing energy-consuming ones such as active transporters and amino acid biosynthesis. Furthermore, our results suggest that a general stress response also took place in the cell during polyP deficiency.

Indexed as

Acid Anhydride HydrolasesBacterial ProteinsBiofilmsEnergy MetabolismLipopolysaccharidesPhosphotransferases (Phosphate Group Acceptor)PolyphosphatesProteomeProteomicsPseudomonasAcid Anhydride HydrolasesBacterial ProteinsexopolyphosphataseLipopolysaccharidesPhosphotransferases (Phosphate Group Acceptor)polyphosphate kinasePolyphosphatesProteome

Identifiers

PMID20067623
PMCPMC2817675
OpenAlexW2046212076

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.