Evidence map›Paper›PMID 20065070›Full record

ArticleGenetics2010

EOR-2 is an obligate binding partner of the BTB-zinc finger protein EOR-1 in Caenorhabditis elegans.

Kelly Howell, Swathi Arur, Tim Schedl, Meera V Sundaram

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
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  8. Article
  9. Article
  10. Review
  11. Article
  12. Cell Death in C. elegans Development.Current topics in developmental biology · 2015
    Review
  13. Canonical RTK-Ras-ERK signaling and related alternative pathways.WormBook : the online review of C. elegans biology · 2013
    Review
  14. Article
  15. Article
  16. Dissection of genetic pathways in C. elegans.Methods in cell biology · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kelly HowellDepartment of Genetics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104, USA.
Swathi Arur
Tim Schedl
Meera V Sundaram
University of Pennsylvania · USWashington University in St. Louis · US

Funding

TRAINING PROGRAM IN CELL AND MOLECULAR BIOLOGYT32GM007229 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 1985 to 2023
$14.0M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
VANADIUM INTERACTION STUDIES IN RELATION TO THE INHIBITION OF NA+-K+-ATPASES06GM008216 · NIGMS · UNIVERSITY OF PUERTO RICO AT HUMACAO · PI BARLETTA, GABRIEL LUIS · 1989 to 2010
$8.0M
Ras Signaling and Tubulogenesis in the C. elegans Excretory (renal) SystemR01GM058540 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SUNDARAM, MEERA · 2000 to 2019
$5.3M
Stem cell proliferation / meiosis decision in C. elegansR01GM063310 · NIGMS · WASHINGTON UNIVERSITY · PI SCHEDL, TIM · 2001 to 2008
$3.2M
NIGMS NIH HHS GM58540NIGMS NIH HHS GM63310NIGMS NIH HHS R01 GM058540NIGMS NIH HHS R01 GM063310NIGMS NIH HHS S06 GM008216NIGMS NIH HHS T32 GM007229NIGMS NIH HHS T32 GM008216NIGMS NIH HHS T32GM008216NIGMS NIH HHS T32GM07229
6 · The paper itself

Abstract

BTB-zinc finger transcription factors play many important roles in metazoan development. In these proteins, the BTB domain is critical for dimerization and for recruiting cofactors to target genes. Identification of these cofactors is important for understanding how BTB-zinc finger proteins influence transcription. Here we show that the novel but conserved protein EOR-2 is an obligate binding partner of the BTB-zinc finger protein EOR-1 in Caenorhabditis elegans. EOR-1 and EOR-2 function together to promote multiple Ras/ERK-dependent cell fates during development, and we show that EOR-1 is a robust substrate of ERK in vitro. A point mutation (L81F) in the EOR-1 BTB domain reduces both ERK phosphorylation and EOR-2 binding and eliminates all detectable biological function without affecting EOR-1 expression levels, localization, or dimerization. This point mutation lies near the predicted charged pocket region of the EOR-1 BTB dimer, a region that, in other BTB-zinc finger proteins, has been proposed to interact with corepressors or coactivators. We also show that a conserved zinc finger-like motif in EOR-2 is required for binding to EOR-1, that the interaction between EOR-1 and EOR-2 is direct, and that EOR-2 can bind to the human BTB-zinc finger protein PLZF. We propose that EOR-2 defines a new family of cofactors for BTB-zinc finger transcription factors that may have conserved roles in other organisms.

Indexed as

Zinc FingersAllelesAmino Acid SequenceAnimalsBinding SitesCaenorhabditis elegansCaenorhabditis elegans ProteinsConserved SequenceExtracellular Signal-Regulated MAP KinasesHumansMAP Kinase Signaling SystemMolecular Sequence DataNuclear ProteinsProtein BindingProtein Structure, Tertiaryras ProteinsCaenorhabditis elegans ProteinsEOR-1 protein, C elegansEOR-2 protein, C elegansExtracellular Signal-Regulated MAP KinasesNuclear Proteinsras Proteins

Identifiers

PMID20065070
PMCPMC2865926
OpenAlexW1922553141

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.