Evidence map›Paper›PMID 20065036›Full record

ArticleMolecular and cellular biology2010

Acetylation of H3 K56 is required for RNA polymerase II transcript elongation through heterochromatin in yeast.

Signe Värv, Kersti Kristjuhan, Kadri Peil, Marko Lõoke, Tanel Mahlakõiv, Keiu Paapsi, Arnold Kristjuhan

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. The Roles of Chromatin Accessibility in Regulating theJournal of fungi (Basel, Switzerland) · 2021
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Acetylated histone H3K56 interacts with Oct4 to promote mouse embryonic stem cell pluripotency.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  11. Article
  12. Article
  13. Autoacetylation of the histone acetyltransferase Rtt109.The Journal of biological chemistry · 2011
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Signe VärvInstitute of Molecular and Cell Biology, University of Tartu, Riia 23, Tartu 51010, Estonia.
Kersti Kristjuhan
Kadri Peil
Marko Lõoke
Tanel Mahlakõiv
Keiu Paapsi
Arnold Kristjuhan
University of Tartu · EE

Funding

Wellcome Trust 081756
6 · The paper itself

Abstract

In Saccharomyces cerevisiae SIR proteins mediate transcriptional silencing, forming heterochromatin structures at repressed loci. Although recruitment of transcription initiation factors can occur even to promoters packed in heterochromatin, it is unclear whether heterochromatin inhibits RNA polymerase II (RNAPII) transcript elongation. To clarify this issue, we recruited SIR proteins to the coding region of an inducible gene and characterized the effects of the heterochromatic structure on transcription. Surprisingly, RNAPII is fully competent for transcription initiation and elongation at the locus, leading to significant loss of heterochromatin proteins from the region. A search for auxiliary factors required for transcript elongation through the heterochromatic locus revealed that two proteins involved in histone H3 lysine 56 acetylation, Rtt109 and Asf1, are needed for efficient transcript elongation by RNAPII. The efficiency of transcription through heterochromatin is also impaired in a strain carrying the K56R mutation in histone H3. Our results show that H3 K56 modification is required for efficient transcription of heterochromatic locus by RNAPII, and we propose that transcription-coupled incorporation of H3 acetylated K56 (acK56) into chromatin is needed for efficient opening of heterochromatic loci for transcription.

Indexed as

Transcription, GeneticAcetylationG1 PhaseGenes, FungalGenetic LociHeterochromatinHistonesLysineNucleosomesOpen Reading FramesRNA, MessengerRNA Polymerase IISaccharomyces cerevisiaeSilent Information Regulator Proteins, Saccharomyces cerevisiaeHeterochromatinHistonesLysineNucleosomesRNA, MessengerRNA Polymerase IISilent Information Regulator Proteins, Saccharomyces cerevisiae

Identifiers

PMID20065036
PMCPMC2832506
OpenAlexW2112994680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.