Evidence map›Paper›PMID 20065000›Full record

ArticleThe American journal of tropical medicine and hygiene2010

Monitoring Leptospira strain collections: the need for quality control.

Gustavo M Cerqueira, Alan J A McBride, Adriano Queiroz, Luciano S Pinto, Everton F Silva, Rudy A Hartskeerl, Mitermayer G Reis, Albert I Ko, Odir A Dellagostin

Abstract read
In one paragraph

Article in The American journal of tropical medicine and hygiene, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Gustavo M CerqueiraBiotechnology Centre, Federal University of Pelotas, Pelotas, RS, Brazil. cerqueira@butantan.gov.br
Alan J A McBride
Adriano Queiroz
Luciano S Pinto
Everton F Silva
Rudy A Hartskeerl
Mitermayer G Reis
Albert I Ko
Odir A Dellagostin

Funding

Disease Determinants of Urban LeptospirosisU01AI088752 · NIAID · YALE UNIVERSITY · PI KO, ALBERT ICKSANG · 2010 to 2014
$3.6M
Natural History of Urban LeptospirosisR01AI052473 · NIAID · YALE UNIVERSITY · PI KO, ALBERT ICKSANG · 2003 to 2013
$2.8M
INTERNATIONAL TRAINING &RESEARCH IN EMERGING INFECTIOUSD43TW000919 · FIC · YALE UNIVERSITY · PI KO, ALBERT ICKSANG · 1997 to 2007
$1.2M
FIC NIH HHS 2D43 TW00919FIC NIH HHS D43 TW000919NIAID NIH HHS 5R01 AI052473NIAID NIH HHS R01 AI052473NIAID NIH HHS U01 AI088752
6 · The paper itself

Abstract

The purpose of this study was to perform a 16S sequence-based quality control of two Leptospira strain collections. 16S rRNA gene sequencing was used to verify two Leptospira reference collections provided by the World Health Organization and maintained at a reference laboratory for leptospirosis in Brazil. Among the 89 serovars evaluated, four conflicting strains were identified in one of the collections. Although 16S rRNA gene sequencing cannot identify Leptospira beyond the species level, it is suitable for the identification of contamination and quality control of leptospiral reference collections. This study highlights the importance of the availability of high-quality 16S rRNA sequences in public databases. In addition, it emphasizes the need for periodical verifications and quality control of Leptospira reference collections.

Indexed as

AnimalsBase SequenceDNA PrimersLeptospiraRNA, Ribosomal, 16SSpecies SpecificityDNA PrimersRNA, Ribosomal, 16S

Identifiers

PMID20065000
PMCPMC2803514

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.