Evidence map›Paper›PMID 20063894›Full record

ArticleBiochemistry2010

Effects of interdomain tether length and flexibility on the kinetics of intramolecular electron transfer in human sulfite oxidase.

Kayunta Johnson-Winters, Anna R Nordstrom, Safia Emesh, Andrei V Astashkin, Asha Rajapakshe, Robert E Berry, Gordon Tollin, John H Enemark

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Hydrogen Sulfide Oxidation by Sulfide Quinone Oxidoreductase.Chembiochem : a European journal of chemical biology · 2021
    Review
  3. Article
  4. HThe Journal of biological chemistry · 2017
    Article
  5. Article
  6. Article
  7. Sulfite-oxidizing enzymes.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Review
  8. Nitrite reduction by molybdoenzymes: a new class of nitric oxide-forming nitrite reductases.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Review
  9. Article
  10. Article
  11. The mononuclear molybdenum enzymes.Chemical reviews · 2014
    Review
  12. Review
  13. Probing the role of a conserved salt bridge in the intramolecular electron transfer kinetics of human sulfite oxidase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2013
    Article
  14. Review
  15. Article
  16. Intramolecular electron transfer in sulfite-oxidizing enzymes: probing the role of aromatic amino acids.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2012
    Article
  17. Article
  18. Review
  19. Article
  20. Molybdenum enzymes in higher organisms.Coordination chemistry reviews · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kayunta Johnson-WintersDepartment of Chemistry and Biochemistry, The University of Arizona, Tucson, Arizona 85721, USA.
Anna R Nordstrom
Safia Emesh
Andrei V Astashkin
Asha Rajapakshe
Robert E Berry
Gordon Tollin
John H Enemark
University of Arizona · US

Funding

STRUCTURAL MODELS FOR MOLYBDOENZYMESR01GM037773 · NIGMS · UNIVERSITY OF ARIZONA · PI ENEMARK, JOHN H · 1986 to 2011
$4.1M
Spectroscopic, Structural and Kinetic Characterization of Sulfite Oxidase from MuF32GM082136 · NIGMS · UNIVERSITY OF ARIZONA · PI JOHNSON-WINTERS, KAYUNTA · 2007 to 2008
$96k
NIGMS NIH HHS 1F32GM082136-01NIGMS NIH HHS F32 GM082136NIGMS NIH HHS GM-037773NIGMS NIH HHS R01 GM037773
6 · The paper itself

Abstract

Sulfite oxidase (SO) is a vitally important molybdenum enzyme that catalyzes the oxidation of toxic sulfite to sulfate. The proposed catalytic mechanism of vertebrate SO involves two intramolecular one-electron transfer (IET) steps from the molybdenum cofactor to the iron of the integral b-type heme and two intermolecular one-electron steps to exogenous cytochrome c. In the crystal structure of chicken SO [Kisker, C., et al. (1997) Cell 91, 973-983], which is highly homologous to human SO (HSO), the heme iron and molybdenum centers are separated by 32 A and the domains containing these centers are linked by a flexible polypeptide tether. Conformational changes that bring these two centers into greater proximity have been proposed [Feng, C., et al. (2003) Biochemistry 42, 5816-5821] to explain the relatively rapid IET kinetics, which are much faster than those theoretically predicted from the crystal structure. To explore the proposed role(s) of the tether in facilitating this conformational change, we altered both its length and flexibility in HSO by site-specific mutagenesis, and the reactivities of the resulting variants have been studied using laser flash photolysis and steady-state kinetics assays. Increasing the flexibility of the tether by mutating several conserved proline residues to alanines did not produce a discernible systematic trend in the kinetic parameters, although mutation of one residue (P105) to alanine produced a 3-fold decrease in the IET rate constant. Deletions of nonconserved amino acids in the 14-residue tether, thereby shortening its length, resulted in more drastically reduced IET rate constants. Thus, the deletion of five amino acid residues decreased IET by 70-fold, so that it was rate-limiting in the overall reaction. The steady-state kinetic parameters were also significantly affected by these mutations, with the P111A mutation causing a 5-fold increase in the sulfite K(m) value, perhaps reflecting a decrease in the ability to bind sulfite. The electron paramagnetic resonance spectra of these proline to alanine and deletion mutants are identical to those of wild-type HSO, indicating no significant change in the Mo active site geometry.

Indexed as

AlanineAmino Acid SubstitutionAnimalsCatalytic DomainChickensConserved SequenceElectron Spin Resonance SpectroscopyElectron TransportHumansKineticsMolybdenumMutagenesis, Site-DirectedPeptidesProlineProtein Structure, TertiaryRecombinant ProteinsAlanineMolybdenumPeptidesProlineRecombinant ProteinsSulfite Oxidase

Identifiers

PMID20063894
PMCPMC2819551
OpenAlexW2031189321

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.