Evidence map›Paper›PMID 20063417›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2010

Analysis of conserved residues in the betapat-3 cytoplasmic tail reveals important functions of integrin in multiple tissues.

Xiaojian Xu, Jeong H Ahn, Phebe Tam, Eun Jeong Yu, Sushil Batra, Erin J Cram, Myeongwoo Lee

Open access · bronzeAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Three alleles in themicroPublication biology · 2020
    Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xiaojian XuDepartment of Biology, Baylor University, Waco, Texas, USA.
Jeong H Ahn
Phebe Tam
Eun Jeong Yu
Sushil Batra
Erin J Cram
Myeongwoo Lee
Baylor University · USNortheastern University · US

Funding

Role of integrin signaling in gonad functionsR15GM077156 · NIGMS · BAYLOR UNIVERSITY · PI LEE, MYEONGWOO · 2006 to 2007
$220k
NIGMS NIH HHS GM077156NIGMS NIH HHS R15 GM077156
6 · The paper itself

Abstract

Integrin cytoplasmic tails contain motifs that link extracellular information to cell behavior such as cell migration and contraction. To investigate the cell functions mediated by the conserved motifs, we created mutations in the Caenorhabditis elegans betapat-3 cytoplasmic tail. The beta1D (799FK800), NPXY, tryptophan (784W), and threonine (797TT798) motifs were disrupted to identify their functions in vivo. Animals expressing integrins with disrupted NPXY motifs were viable, but displayed distal tip cell migration and ovulation defects. The conserved threonines were required for gonad migration and contraction as well as tail morphogenesis, whereas disruption of the beta1D and tryptophan motifs produced only mild defects. To abolish multiple conserved motifs, a beta1C-like variant, which results in a frameshift, was constructed. The betapat-3(beta1C) transgenic animals showed cold-sensitive larval arrests and defective muscle structure and gonad migration and contraction. Our study suggests that the conserved NPXY and TT motifs play important roles in the tissue-specific function of integrin.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnimalsCaenorhabditis elegansCytoplasmFemaleHumansIntegrin beta1IntegrinsMolecular Sequence DataOvulationProtein Structure, TertiarySequence Homology, Amino AcidThreonineTyrosineIntegrin beta1integrin beta1CIntegrinsThreonineTyrosine

Identifiers

PMID20063417
PMCPMC3081610
OpenAlexW2049421443

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.