Evidence map›Paper›PMID 20063107›Full record

ArticleMolecular genetics and genomics : MGG2010

Characterization of the maintained vegetative phase deletions from diploid wheat and their effect on VRN2 and FT transcript levels.

Assaf Distelfeld, Jorge Dubcovsky

Open access · hybridAbstract read
In one paragraph

Article in Molecular genetics and genomics : MGG, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Contemplation on wheat vernalization.Frontiers in plant science · 2022
    Review
  10. Frontiers in plant science · 2021
    Article
  11. Article
  12. Article
  13. Review
  14. Establishment of a vernalization requirement inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  15. Article
  16. Frontiers in plant science · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Assaf DistelfeldDepartment of Plant Sciences, University of California, Davis, CA 95616, USA.
Jorge Dubcovsky
University of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Allelic differences at the VRN1 (AP1/CAL/FRU), VRN2 (ZCCT) and VRN3 (FT) vernalization genes affect flowering time in wheat. The two maintained vegetative phase (mvp) mutants from Triticum monococcum L., previously reported as carrying a single gene (VRN1) deletion, are incapable of flowering. In this study, we show that both mvp lines have larger deletions that include the genes AGLG1, CYS, PHYC, VRN1 and possibly others. The original mvp deletions were generated in lines that lack the VRN2 gene. Therefore, to study the effect of the mvp deletions on the regulation of VRN2 we generated populations segregating for both genes simultaneously. The two mvp deletions co-segregated with the non-flowering phenotype, but surprisingly, the lines homozygous for the mvp mutations showed reduced transcript levels of both VRN2 and FT relative to the wild type. The VRN1 deletion is an unlikely cause of the down-regulation of VRN2 since VRN2 transcript levels are higher in the fall, before VRN1 is expressed, and are down-regulated by VRN1. Since both VRN2 and FT are regulated by light and photoperiod, their down-regulation in the mvp mutants might be related to the deletion of the PHYC photoreceptor. However, alternative hypotheses including combinations of other genes deleted in the mvp mutants cannot be ruled out. Until the specific gene(s) responsible for the down-regulation of VRN2 and FT and the non-flowering phenotype are precisely identified, it is premature to use these results to postulate alternative flowering models.

Indexed as

Gene Expression Regulation, PlantTranscription, GeneticCarrier ProteinsDiploidyDNA PrimersGenes, PlantGenotypeMutationNuclear ProteinsPhenotypePlant ProteinsPolymerase Chain ReactionRepressor ProteinsSeasonsSequence DeletionTriticumCarrier ProteinsDNA PrimersNuclear ProteinsPlant ProteinsRepressor Proteins

Identifiers

PMID20063107
PMCPMC2820692
OpenAlexW2158704230

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.