Evidence map›Paper›PMID 20062529›Full record

ArticlePloS one2010

Population structure of a hybrid clonal group of methicillin-resistant Staphylococcus aureus, ST239-MRSA-III.

Davida S Smyth, Linda K McDougal, Frode W Gran, Anand Manoharan, Mark C Enright, Jae-Hoon Song, Herminia de Lencastre, D Ashley Robinson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 81 citations in OpenAlex.

  1. Molecular epidemiology of clinicalFrontiers in microbiology · 2026
    Article
  2. CharacterizingmSystems · 2025
    Article
  3. Review
  4. Article
  5. Sequencing a CC239-MRSA-III with a novel composite SCC mec element from Kuwait.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
  6. Clonal Complexes Distribution ofAntibiotics (Basel, Switzerland) · 2023
    Article
  7. Characterisation of Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Local Diversification of Methicillin- ResistantFrontiers in microbiology · 2019
    Article
  12. Article
  13. The distribution of bacterial doubling times in the wild.Proceedings. Biological sciences · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. ST2249-MRSA-III: a second major recombinant methicillin-resistant Staphylococcus aureus clone causing healthcare infection in the 1970s.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 6 countries.

Davida S SmythDepartment of Microbiology and Immunology, New York Medical College, Valhalla, New York, United States of America.
Linda K McDougal
Frode W Gran
Anand Manoharan
Mark C Enright
Jae-Hoon Song
Herminia de Lencastre
D Ashley Robinson
New York Medical College · USCenters for Disease Control and Prevention · USChristian Medical College & Hospital · INImperial College London · GBRockefeller University · USSt Olav's University Hospital · NOSungkyunkwan University · KR

Funding

Population Genomics of StaphylococciR01GM080602 · NIGMS · UNIVERSITY OF MISSISSIPPI MED CTR · PI ROBINSON, DAVID ASHLEY · 2007 to 2016
$1.8M
NIGMS NIH HHS GM080602NIGMS NIH HHS R01 GM080602
6 · The paper itself

Abstract

The methicillin-resistant Staphylococcus aureus (MRSA) clonal group known as ST239-MRSA-III is notable for its hybrid origin and for causing sustained hospital epidemics worldwide since the late 1970s. We studied the population structure of this MRSA clonal group using a sample of 111 isolates that were collected over 34 years from 29 countries. Genetic variation was assessed using typing methods and novel ascertainment methods, resulting in approximately 15 kb of sequence from 32 loci for all isolates. A single most parsimonious tree, free of homoplasy, partitioned 28 haplotypes into geographically-associated clades, including prominent European, Asian, and South American clades. The rate of evolution was estimated to be approximately 100x faster than standard estimates for bacteria, and dated the most recent common ancestor of these isolates to the mid-20th century. Associations were discovered between the ST239 phylogeny and the ccrB and dru loci of the methicillin resistance genetic element, SCCmec type III, but not with the accessory components of the element that are targeted by multiplex PCR subtyping tools. In summary, the evolutionary history of ST239 can be characterized by rapid clonal diversification that has left strong evidence of geographic and temporal population structure. SCCmec type III has remained linked to the ST239 chromosome during clonal diversification, but it has undergone homoplasious losses of accessory components. These results provide a population genetics framework for the precise identification of emerging ST239 variants, and invite a re-evaluation of the markers used for subtyping SCCmec.

Indexed as

Base SequenceDNA PrimersEvolution, MolecularGenetic VariationHaplotypesMethicillin-Resistant Staphylococcus aureusMolecular EpidemiologyPhylogenyPolymerase Chain ReactionDNA Primers

Identifiers

PMID20062529
PMCPMC2797301
OpenAlexW2065606193

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.