Evidence map›Paper›PMID 20060836›Full record

ArticleJournal of molecular biology2010

An extracellular disulfide bond forming protein (DsbF) from Mycobacterium tuberculosis: structural, biochemical, and gene expression analysis.

Nicholas Chim, Robert Riley, Juliana The, Soyeon Im, Brent Segelke, Tim Lekin, Minmin Yu, Li Wei Hung, Tom Terwilliger, Julian P Whitelegge and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Disulfide bond formation in prokaryotes.Nature microbiology · 2018
    Review
  7. Article
  8. Article
  9. Review
  10. Structure of a DsbF homologue from Corynebacterium diphtheriae.Acta crystallographica. Section F, Structural biology communications · 2014
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. The TB Structural Genomics Consortium: a decade of progress.Tuberculosis (Edinburgh, Scotland) · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Nicholas ChimDepartment of Molecular Biology and Biochemistry, UCI, Irvine, CA 92697, USA.
Robert Riley
Juliana The
Soyeon Im
Brent Segelke
Tim Lekin
Minmin Yu
Li Wei Hung
Tom Terwilliger
Julian P Whitelegge
Celia W Goulding
Lawrence Livermore National Laboratory · USLos Alamos National Laboratory · USUC Irvine Health · USUniversity of California, Los Angeles · USLawrence Berkeley National Laboratory · US

Funding

The Cloning Protein Production, Crystallization, and X-ray Data Collection CoreP01AI068135 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI ALBER, THOMAS C · 2006 to 2010
$13.2M
NIAID NIH HHS P01 AI068135PHS HHS N01 A1-75320PHS HHS P01AIO68135
6 · The paper itself

Abstract

Disulfide bond forming (Dsb) proteins ensure correct folding and disulfide bond formation of secreted proteins. Previously, we showed that Mycobacterium tuberculosis DsbE (Mtb DsbE, Rv2878c) aids in vitro oxidative folding of proteins. Here, we present structural, biochemical, and gene expression analyses of another putative Mtb secreted disulfide bond isomerase protein homologous to Mtb DsbE, Mtb DsbF (Rv1677). The X-ray crystal structure of Mtb DsbF reveals a conserved thioredoxin fold although the active-site cysteines may be modeled in both oxidized and reduced forms, in contrast to the solely reduced form in Mtb DsbE. Furthermore, the shorter loop region in Mtb DsbF results in a more solvent-exposed active site. Biochemical analyses show that, similar to Mtb DsbE, Mtb DsbF can oxidatively refold reduced, unfolded hirudin and has a comparable pK(a) for the active-site solvent-exposed cysteine. However, contrary to Mtb DsbE, the Mtb DsbF redox potential is more oxidizing and its reduced state is more stable. From computational genomics analysis of the M. tuberculosis genome, we identified a potential Mtb DsbF interaction partner, Rv1676, a predicted peroxiredoxin. Complex formation is supported by protein coexpression studies and inferred by gene expression profiles, whereby Mtb DsbF and Rv1676 are upregulated under similar environments. Additionally, comparison of Mtb DsbF and Mtb DsbE gene expression data indicates anticorrelated gene expression patterns, suggesting that these two proteins and their functionally linked partners constitute analogous pathways that may function under different conditions.

Indexed as

Amino Acid SequenceAntigens, BacterialBacterial ProteinsBase SequenceCrystallography, X-RayCysteineDisulfidesDNA PrimersGene ExpressionGenes, BacterialModels, MolecularMolecular Sequence DataMycobacterium tuberculosisOxidation-ReductionPeptide MappingProtein ConformationAntigens, BacterialBacterial ProteinsCysteineDisulfidesDNA Primersmpt53 protein, Mycobacterium tuberculosis

Identifiers

PMID20060836
PMCPMC2883863
OpenAlexW2142347024

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.