Evidence map›Paper›PMID 20060622›Full record

ArticleEuropean journal of medicinal chemistry2010

Design, synthesis and evaluation of analogs of initiation factor 4E (eIF4E) cap-binding antagonist Bn7-GMP.

Yan Jia, Ting-Lan Chiu, Elizabeth A Amin, Vitaly Polunovsky, Peter B Bitterman, Carston R Wagner

Abstract read
In one paragraph

Article in European journal of medicinal chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Review
  2. Application of Mammalian Nudix Enzymes to Capped RNA Analysis.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  3. Article
  4. Trinucleotide mRNA Cap AnalogueJournal of the American Chemical Society · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Targeting mTOR and eIF4E: a feasible scenario in ovarian cancer therapy.Cancer drug resistance (Alhambra, Calif.) · 2021
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Targeting eukaryotic protein translation in mesothelioma.Translational lung cancer research · 2017
    Review
  16. Synthetic mRNA capping.Beilstein journal of organic chemistry · 2017
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yan JiaDepartment of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
Ting-Lan Chiu
Elizabeth A Amin
Vitaly Polunovsky
Peter B Bitterman
Carston R Wagner

Funding

Translational Control in IPFR01HL089249 · NHLBI · UNIVERSITY OF MINNESOTA · PI BITTERMAN, PETER B · 2008 to 2011
$1.8M
Translational Apparatus as a Target for Drug DiscoveryU01CA091220 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI POLUNOVSKY, VITALY A · 2001 to 2004
$1.6M
Translational Control of Breast CancerR01CA111338 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI POLUNOVSKY, VITALY A · 2005 to 2010
$1.4M
NCI NIH HHS R01 CA111338NCI NIH HHS U01 CA091220NHLBI NIH HHS R01 HL089249
6 · The paper itself

Abstract

Aberrant regulation of cap-dependent translation has been frequently observed in the development of cancer. Association of the cap-binding protein eIF4E with N(7)-methylated guanosine capped mRNA is the rate limiting step governing translation initiation; and therefore represents an attractive process for cancer drug discovery. Previously, replacement of the 7-Me group of the Me(7)-guanosine monophosphate with a benzyl group has been found to increase binding affinity to eIF4E. Recent X-ray crystallographic studies have revealed that the cap-binding pocket undergoes a unique structural change in order to accommodate the benzyl group. To explore the structure-activity relationships governing the affinity of N(7)-benzylated guanosine monophosphate (Bn(7)-GMP) for eIF4E, we virtually screened a library of 80 Bn(7)-GMP analogs utilizing CombiGlide as implemented in Schrodinger. A subset library of substituted Bn(7)-GMP analogs was synthesized and their dissociation constants (K(d)) were determined. Due to the poor correlation between docking/scoring results and experimental binding affinities, three-dimensional quantitative structure-activity relationship (3D-QSAR) calculations were performed. Two highly predictive and self-consistent CoMFA (comparative molecular field analysis) and CoMSIA (comparative molecular similarity indices analysis) models were derived and optimized. These models may be useful for the future design of eIF4E cap-binding antagonists.

Indexed as

RNA CapsAmino Acid SequenceChromatography, High Pressure LiquidEukaryotic Initiation Factor-4EGuanosine MonophosphateMagnetic Resonance SpectroscopyMass SpectrometryModels, MolecularMolecular Sequence DataQuantitative Structure-Activity RelationshipRegression AnalysisEukaryotic Initiation Factor-4EGuanosine MonophosphateRNA CapsanticancerantifibroticCoMFACoMSIAeIF4Etranslation initiation

Identifiers

PMID20060622
PMCPMC2853597

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.