Evidence map›Paper›PMID 20059764›Full record

ArticleBMC genomics2010

Analysis of the heat shock response in mouse liver reveals transcriptional dependence on the nuclear receptor peroxisome proliferator-activated receptor alpha (PPARalpha).

Beena Vallanat, Steven P Anderson, Holly M Brown-Borg, Hongzu Ren, Sander Kersten, Sudhakar Jonnalagadda, Rajagopalan Srinivasan, J Christopher Corton

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 48 citations in OpenAlex.

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  10. Modelling physical resilience in ageing mice.Mechanisms of ageing and development · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Beena VallanatNHEERL Toxicogenomics Core, US EPA, Research Triangle Park, NC 27711, USA. corton.chris@epa.gov
Steven P Anderson
Holly M Brown-Borg
Hongzu Ren
Sander Kersten
Sudhakar Jonnalagadda
Rajagopalan Srinivasan
J Christopher Corton
Research Triangle Park Foundation · USAgency for Science, Technology and Research · SGInstitute of Chemical and Engineering Sciences · SGUniversity of North Dakota · USWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe nuclear receptor peroxisome proliferator-activated receptor alpha (PPARalpha) regulates responses to chemical or physical stress in part by altering expression of genes involved in proteome maintenance. Many of these genes are also transcriptionally regulated by heat shock (HS) through activation by HS factor-1 (HSF1). We hypothesized that there are interactions on a genetic level between PPARalpha and the HS response mediated by HSF1.

resultsWild-type and PPARalpha-null mice were exposed to HS, the PPARalpha agonist WY-14,643 (WY), or both; gene and protein expression was examined in the livers of the mice 4 or 24 hrs after HS. Gene expression profiling identified a number of Hsp family members that were altered similarly in both mouse strains. However, most of the targets of HS did not overlap between strains. A subset of genes was shown by microarray and RT-PCR to be regulated by HS in a PPARalpha-dependent manner. HS also down-regulated a large set of mitochondrial genes specifically in PPARalpha-null mice that are known targets of PPARgamma co-activator-1 (PGC-1) family members. Pretreatment of PPARalpha-null mice with WY increased expression of PGC-1beta and target genes and prevented the down-regulation of the mitochondrial genes by HS. A comparison of HS genes regulated in our dataset with those identified in wild-type and HSF1-null mouse embryonic fibroblasts indicated that although many HS genes are regulated independently of both PPARalpha and HSF1, a number require both factors for HS responsiveness.

conclusionsThese findings demonstrate that the PPARalpha genotype has a dramatic effect on the transcriptional targets of HS and support an expanded role for PPARalpha in the regulation of proteome maintenance genes after exposure to diverse forms of environmental stress including HS.

Indexed as

AnimalsDNA-Binding ProteinsDown-RegulationGene Expression ProfilingGene Expression RegulationHeat-Shock ProteinsHeat-Shock ResponseHeat Shock Transcription FactorsHot TemperatureLiverMaleMiceMice, KnockoutOligonucleotide Array Sequence AnalysisPPAR alphaPyrimidinesDNA-Binding ProteinsHeat-Shock ProteinsHeat Shock Transcription FactorsHsf1 protein, mousepirinixic acidPPAR alphaPyrimidinesTranscription Factors

Identifiers

PMID20059764
PMCPMC2823686
OpenAlexW1969857764

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.