Evidence map›Paper›PMID 20059749›Full record

ArticleTraffic (Copenhagen, Denmark)2010

Establishing a role for the GTPase Ypt1p at the late Golgi.

Anthony Sclafani, Shuliang Chen, Felix Rivera-Molina, Karin Reinisch, Peter Novick, Susan Ferro-Novick

Abstract read
In one paragraph

Article in Traffic (Copenhagen, Denmark), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Arf1 orchestrates Rab GTPase conversion at theMolecular biology of the cell · 2021
    Article
  7. Article
  8. Off the wall: The rhyme and reason ofCell surface (Amsterdam, Netherlands) · 2019
    Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. TRAPP Complexes in Secretion and Autophagy.Frontiers in cell and developmental biology · 2016
    Review
  16. Ypt/Rab GTPases: principles learned from yeast.Critical reviews in biochemistry and molecular biology · 2015
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anthony SclafaniDepartment of Cell Biology, Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06519, USA.
Shuliang Chen
Felix Rivera-Molina
Karin Reinisch
Peter Novick
Susan Ferro-Novick

Funding

Coordination of membrane traffic through rab GEF and GAP cascadesR01GM082861 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NOVICK, PETER JAY · 2008 to 2020
$4.4M
Regulatory Mechanisms in Membrane TraffickingR01GM080616 · NIGMS · YALE UNIVERSITY · PI REINISCH, KARIN M · 2007 to 2018
$4.1M
CONFERENCE ON THE FUNCTIONS OF SMALL GTPASESR13CA080133 · NCI · KEYSTONE SYMPOSIA · PI FERRO-NOVICK, SUSAN S · 1999 to 1999
–
Howard Hughes Medical InstituteNCI NIH HHS R13 CA080133NIGMS NIH HHS GM080616NIGMS NIH HHS GM082861NIGMS NIH HHS R01 GM080616NIGMS NIH HHS R01 GM082861
6 · The paper itself

Abstract

GTPases of the Rab family cycle between an inactive (GDP-bound) and active (GTP-bound) conformation. The active form of the Rab regulates a variety of cellular functions via multiple effectors. Guanine nucleotide exchange factors (GEFs) activate Rabs by accelerating the exchange of GDP for GTP, while GTPase activating proteins (GAPs) inactivate Rabs by stimulating the hydrolysis of GTP. The GTPase Ypt1p is required for endoplasmic reticulum (ER)-Golgi and intra-Golgi traffic in the yeast Saccharomyces cerevisiae. Recent findings, however, have shown that Ypt1p GEF, GAP and an effector are all required for traffic from the early endosome to the Golgi. Here we describe a screen for ypt1 mutants that block traffic from the early endosome to the late Golgi, but not general secretion. This screen has led to the identification of a collection of recessive and dominant mutants that block traffic from the early endosome. While it has long been known that Ypt1p regulates the flow of biosynthetic traffic into the cis side of the Golgi, these findings have established a role for Ypt1p in the regulation of early endosome-Golgi traffic. We propose that Ypt1p regulates the flow of traffic into the cis and trans side of the Golgi via multiple effectors.

Indexed as

EndosomesGenes, DominantGenes, RecessiveGolgi ApparatusGuanine Nucleotide Exchange FactorsMutationProtein Transportrab GTP-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsGuanine Nucleotide Exchange Factorsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsYPT1 protein, S cerevisiaeearly endosomeGolgimembrane trafficRab

Identifiers

PMID20059749
PMCPMC2861988

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.