Evidence map›Paper›PMID 20056739›Full record

ArticleClinical chemistry2010

Evaluation of the PAX8/PPARG translocation in follicular thyroid cancer with a 4-color reverse-transcription PCR assay and automated high-resolution fragment analysis.

Alicia Algeciras-Schimnich, Dragana Milosevic, Bryan McIver, Heather Flynn, Honey V Reddi, Norman L Eberhardt, Stefan K G Grebe

Abstract readEvaluation Study
In one paragraph

Article in Clinical chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 31 citations in OpenAlex.

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  9. In utero transplanted human hepatocytes allow postnatal engraftment of human hepatocytes in pigs.Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Alicia Algeciras-SchimnichDepartment of Laboratory Medicine and Pathology, Mayo Clinic, 200 First St. SW, Rochester, MN 55905, USA.
Dragana Milosevic
Bryan McIver
Heather Flynn
Honey V Reddi
Norman L Eberhardt
Stefan K G Grebe
Mayo Clinic in Arizona · US

Funding

TUMOR SUPPRESSORS AND DIFFERENTIATED THYROID CANCERR01CA080117 · NCI · MAYO CLINIC ROCHESTER · PI EBERHARDT, NORMAN L · 1999 to 2008
$2.0M
NCI NIH HHS CA80117NCI NIH HHS R01 CA080117
6 · The paper itself

Abstract

backgroundMolecular testing of thyroid malignancies, in combination with cytologic and histologic examination, is becoming increasingly attractive as a tool for refining traditional morphologic diagnosis. The molecular changes associated with follicular thyroid carcinoma (FTC) are point mutations in RAS oncogenes or the presence of PAX8/PPARG (paired box 8/peroxisome proliferator-activated receptor gamma) rearrangement.

methodsWe developed and validated a clinical assay for the detection of PAX8/PPARG rearrangements that uses a 4-color reverse-transcription PCR (RT-PCR) assay and high-resolution fragment analysis.

resultsThe RT-PCR assay is applicable for detecting the various described fusion transcripts of PAX8/PPARG in formalin-fixed, paraffin-embedded thyroid tissue and in fine-needle aspirate biopsy washes from thyroid nodules. The analytical sensitivity of the assay is 1 abnormal cell in a background of 100-10 000 translocation-negative cells. A comparison of the RT-PCR assay with dual-fusion fluorescence in situ hybridization showed an overall concordance of 95%. With this assay, we obtained a prevalence for the PAX8/PPARG rearrangement in FTC of 62% (13 of 21 cases), compared with a 5% prevalence (3 of 55) for other follicular cell-derived neoplasms.

conclusionsThe introduction of this assay into clinical practice could provide useful information for the diagnosis and possibly for the prognosis and treatment of thyroid cancer in the future.

Indexed as

Gene Expression Regulation, NeoplasticAdenocarcinoma, FollicularHumansPaired Box Transcription FactorsPAX8 Transcription FactorPPAR gammaReverse Transcriptase Polymerase Chain ReactionSensitivity and SpecificityThyroid NeoplasmsPaired Box Transcription FactorsPAX8 protein, humanPAX8 Transcription FactorPPAR gamma

Identifiers

PMID20056739
PMCPMC3918957
OpenAlexW2166521984

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.