Evidence map›Paper›PMID 20054395›Full record

ArticleNature2010

Endogenous non-retroviral RNA virus elements in mammalian genomes.

Masayuki Horie, Tomoyuki Honda, Yoshiyuki Suzuki, Yuki Kobayashi, Takuji Daito, Tatsuo Oshida, Kazuyoshi Ikuta, Patric Jern, Takashi Gojobori, John M Coffin and 1 more

Abstract read
In one paragraph

Article in Nature, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 225 papers.

0numbers the graph read from it
0cells of the map it votes in
225citing papers in PubMed
27.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

225 citing papers in PubMed, 495 citations in OpenAlex.

  1. Trial
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  5. Review
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  9. Article
  10. Article
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  13. Human Riboviruses: A Comprehensive Study.Journal of molecular evolution · 2025
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

165 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

Masayuki HorieDepartment of Virology, Research Institute for Microbial Diseases (BIKEN), Osaka University, Osaka 565-0871, Japan.
Tomoyuki Honda
Yoshiyuki Suzuki
Yuki Kobayashi
Takuji Daito
Tatsuo Oshida
Kazuyoshi Ikuta
Patric Jern
Takashi Gojobori
John M Coffin
Keizo Tomonaga
Osaka University · JPBank of Japan · JPTufts University · USJapan Science and Technology Agency · JPJapan Society for the Promotion of Science · JPNational Institute of Genetics · JPObihiro University of Agriculture and Veterinary Medicine · JP

Funding

Retrovirus EvolutionR37CA089441 · NCI · TUFTS UNIVERSITY BOSTON · PI COFFIN, JOHN M · 2006 to 2015
$6.5M
NCI NIH HHS R37 CA 089441NCI NIH HHS R37 CA089441
6 · The paper itself

Abstract

Retroviruses are the only group of viruses known to have left a fossil record, in the form of endogenous proviruses, and approximately 8% of the human genome is made up of these elements. Although many other viruses, including non-retroviral RNA viruses, are known to generate DNA forms of their own genomes during replication, none has been found as DNA in the germline of animals. Bornaviruses, a genus of non-segmented, negative-sense RNA virus, are unique among RNA viruses in that they establish persistent infection in the cell nucleus. Here we show that elements homologous to the nucleoprotein (N) gene of bornavirus exist in the genomes of several mammalian species, including humans, non-human primates, rodents and elephants. These sequences have been designated endogenous Borna-like N (EBLN) elements. Some of the primate EBLNs contain an intact open reading frame (ORF) and are expressed as mRNA. Phylogenetic analyses showed that EBLNs seem to have been generated by different insertional events in each specific animal family. Furthermore, the EBLN of a ground squirrel was formed by a recent integration event, whereas those in primates must have been formed more than 40 million years ago. We also show that the N mRNA of a current mammalian bornavirus, Borna disease virus (BDV), can form EBLN-like elements in the genomes of persistently infected cultured cells. Our results provide the first evidence for endogenization of non-retroviral virus-derived elements in mammalian genomes and give novel insights not only into generation of endogenous elements, but also into a role of bornavirus as a source of genetic novelty in its host.

Indexed as

Amino Acid SequenceAnimalsBorna disease virusBornaviridaeCell LineConserved SequenceEvolution, MolecularGenes, ViralGenomeHost-Pathogen InteractionsHumansMammalsModels, GeneticMolecular Sequence DataOpen Reading FramesPhylogeny

Identifiers

PMID20054395
PMCPMC2818285
OpenAlexW2074897380

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.