Evidence map›Paper›PMID 20052994›Full record

ArticleBiochemistry2010

Exploring the roles of the metal ions in Escherichia coli copper amine oxidase.

Mark A Smith, Pascale Pirrat, Arwen R Pearson, Christian R P Kurtis, Chi H Trinh, Thembaninkosi G Gaule, Peter F Knowles, Simon E V Phillips, Michael J McPherson

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Homogeneous batch micro-crystallization of proteins from ammonium sulfate.Acta crystallographica. Section D, Structural biology · 2021
    Article
  4. Article
  5. Article
  6. CaJournal of food and drug analysis · 2015
    Article
  7. Review
  8. Copper active sites in biology.Chemical reviews · 2014
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Mark A SmithAstbury Centre for Structural Molecular Biology and Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
Pascale Pirrat
Arwen R Pearson
Christian R P Kurtis
Chi H Trinh
Thembaninkosi G Gaule
Peter F Knowles
Simon E V Phillips
Michael J McPherson
University of Leeds · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C00468X/1Medical Research Council G0500367Wellcome Trust 072570/Z/03/Z
6 · The paper itself

Abstract

To investigate the role of the active site copper in Escherichia coli copper amine oxidase (ECAO), we initiated a metal-substitution study. Copper reconstitution of ECAO (Cu-ECAO) restored only approximately 12% wild-type activity as measured by k(cat(amine)). Treatment with EDTA, to remove exogenous divalent metals, increased Cu-ECAO activity but reduced the activity of wild-type ECAO. Subsequent addition of calcium restored wild-type ECAO and further enhanced Cu-ECAO activities. Cobalt-reconstituted ECAO (Co-ECAO) showed lower but significant activity. These initial results are consistent with a direct electron transfer from TPQ to oxygen stabilized by the metal. If a Cu(I)-TPQ semiquinone mechanism operates, then an alternative outer-sphere electron transfer must also exist to account for the catalytic activity of Co-ECAO. The positive effect of calcium on ECAO activity led us to investigate the peripheral calcium binding sites of ECAO. Crystallographic analysis of wild-type ECAO structures, determined in the presence and absence of EDTA, confirmed that calcium is the normal ligand of these peripheral sites. The more solvent exposed calcium can be easily displaced by mono- and divalent cations with no effect on activity, whereas removal of the more buried calcium ion with EDTA resulted in a 60-90% reduction in ECAO activity and the presence of a lag phase, which could be overcome under oxygen saturation or by reoccupying the buried site with various divalent cations. Our studies indicate that binding of metal ions in the peripheral sites, while not essential, is important for maximal enzymatic activity in the mature enzyme.

Indexed as

Amine Oxidase (Copper-Containing)Amino Acid SequenceCalciumCatalytic DomainCopperCrystallography, X-RayDihydroxyphenylalanineEdetic AcidEnzyme ActivationEscherichia coli ProteinsHumansMetals, Alkaline EarthMetals, HeavyMolecular Sequence DataOxidation-ReductionProtein Binding6-hydroxydopa quinoneAmine Oxidase (Copper-Containing)CalciumCopperDihydroxyphenylalanineEdetic AcidEscherichia coli ProteinsMetals, Alkaline EarthMetals, Heavy

Identifiers

PMID20052994
PMCPMC2817917
OpenAlexW2087409935

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.