Evidence map›Paper›PMID 20051268›Full record

ArticleFungal genetics and biology : FG & B2010

Circadian rhythms in Neurospora crassa: dynamics of the clock component frequency visualized using a fluorescent reporter.

Ernestina Castro-Longoria, Michael Ferry, Salomón Bartnicki-Garcia, Jeff Hasty, Stuart Brody

Open access · greenAbstract read
In one paragraph

Article in Fungal genetics and biology : FG & B, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Origin of the clock inFrontiers in molecular biosciences · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. What is Phase in Cellular Clocks?The Yale journal of biology and medicine · 2019
    Article
  11. Article
  12. Ecology and evolution · 2016
    Article
  13. Article
  14. Article
  15. Temperature compensation and temperature sensation in the circadian clock.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ernestina Castro-LongoriaDepartment of Microbiology, CICESE, Ensenada, B.C., Mexico. ecastro@cicese.mx <ecastro@cicese.mx>
Michael Ferry
Salomón Bartnicki-Garcia
Jeff Hasty
Stuart Brody
Center for Scientific Research and Higher Education at Ensenada · MXLa Jolla Bioengineering Institute · USUniversity of California, San Diego · US

Funding

Metabolic Control in a Dynamic EnvironmentR01GM079333 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M · 2007 to 2014
$3.3M
NIGMS NIH HHS R01 GM079333
6 · The paper itself

Abstract

The frequency (frq) gene of Neurospora crassa has long been considered essential to the function of this organism's circadian rhythm. Increasingly, deciphering the coupling of core oscillator genes such as frq to the output pathways of the circadian rhythm has become a major focus of circadian research. To address this coupling it is critical to have a reporter of circadian activity that can deliver high resolution spatial and temporal information about the dynamics of core oscillatory proteins such as FRQ. However, due to the difficulty of studying the expression of circadian rhythm genes in aerobic N. crassa cultures, little is known about the dynamics of this gene under physiologically realistic conditions. To address these issues we report a fluorescent fusion to the frq gene using a codon optimized version of the mCherry gene. To trace the expression and accumulation of FRQ-mCherryNC (FRQ-mCh) during the circadian rhythm, growing vegetative hyphae were scanned every hour under confocal microscopy (100x). Fluorescence of FRQ-mCh was detected only at the growing edge of the colony, and located in the cytoplasm and nuclei of vegetative hyphae for a distance of approximately 150-200microm from the apices of leading hyphae. When driven by the frq promoter, apparently there was also a second FRQ entrance into the nucleus during the circadian cycle; however the second entrance had a lower accumulation level than the first entrance. Thus this fluorescent fusion protein has proven useful in tracking the spatial dynamics of the frq protein and has indicated that the dynamics of the FRQ protein's nuclear trafficking may be more complex than previously realized.

Indexed as

Circadian RhythmGene Expression Regulation, FungalArtificial Gene FusionFluorescenceGenes, ReporterHyphaeLuminescent ProteinsMicroscopy, ConfocalNeurospora crassaLuminescent Proteins

Identifiers

PMID20051268
PMCPMC2935182
OpenAlexW2101722000

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.