Evidence map›Paper›PMID 20049725›Full record

ArticleEMBO molecular medicine2009

Integrative genomic analyses of neurofibromatosis tumours identify SOX9 as a biomarker and survival gene.

Shyra J Miller, Walter J Jessen, Tapan Mehta, Atira Hardiman, Emily Sites, Sergio Kaiser, Anil G Jegga, Hua Li, Meena Upadhyaya, Marco Giovannini and 10 more

Open access · goldAbstract read
In one paragraph

Article in EMBO molecular medicine, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 1 synthesis or guideline pooled it, 129 citations in OpenAlex.

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  17. Insights into the Pathogenesis of NF1-Associated Neoplasms.JID innovations : skin science from molecules to population health · 2021
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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 10 institutions in 5 countries.

Shyra J MillerDivision of Experimental Hematology, Cincinnati Children's Hospital, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Walter J Jessen
Tapan Mehta
Atira Hardiman
Emily Sites
Sergio Kaiser
Anil G Jegga
Hua Li
Meena Upadhyaya
Marco Giovannini
David Muir
Margaret R Wallace
Eva Lopez
Eduard Serra
G Petur Nielsen
Conxi Lazaro
Anat Stemmer-Rachamimov
Grier Page
Bruce J Aronow
Nancy Ratner
Cincinnati Children's Hospital Medical Center · USUniversity of Florida · USInstitut d'Investigació Biomédica de Bellvitge · ESUniversity of Alabama at Birmingham · USFondation Jean Dausset-CEPH · FRHarvard University · USInstitut Català d'Oncologia · ESMassachusetts General Hospital · USUniversity of Cincinnati Medical Center · USUniversity of Wales · GB

Funding

REGULATION OF CELLULAR GROWTH AND DIFFERENTIATIONT32CA059268 · NCI · UNIVERSITY OF CINCINNATI · PI KHAN, SOHAIB A. · 1993 to 2010
$2.3M
Identifying Therapeutic Targets for MPNSTK01NS049191 · NINDS · CINCINNATI CHILDRENS HOSP MED CTR · PI MILLER, SHYRA J · 2005 to 2007
$405k
NCI NIH HHS T32 CA059268NCI NIH HHS T32 CA 59268NINDS NIH HHS K01 NS049191NINDS NIH HHS K01-NS049191
6 · The paper itself

Abstract

Understanding the biological pathways critical for common neurofibromatosis type 1 (NF1) peripheral nerve tumours is essential, as there is a lack of tumour biomarkers, prognostic factors and therapeutics. We used gene expression profiling to define transcriptional changes between primary normal Schwann cells (n = 10), NF1-derived primary benign neurofibroma Schwann cells (NFSCs) (n = 22), malignant peripheral nerve sheath tumour (MPNST) cell lines (n = 13), benign neurofibromas (NF) (n = 26) and MPNST (n = 6). Dermal and plexiform NFs were indistinguishable. A prominent theme in the analysis was aberrant differentiation. NFs repressed gene programs normally active in Schwann cell precursors and immature Schwann cells. MPNST signatures strongly differed; genes up-regulated in sarcomas were significantly enriched for genes activated in neural crest cells. We validated the differential expression of 82 genes including the neural crest transcription factor SOX9 and SOX9 predicted targets. SOX9 immunoreactivity was robust in NF and MPSNT tissue sections and targeting SOX9 - strongly expressed in NF1-related tumours - caused MPNST cell death. SOX9 is a biomarker of NF and MPNST, and possibly a therapeutic target in NF1.

Indexed as

Gene Expression ProfilingGene Expression Regulation, NeoplasticBiomarkers, TumorCell Line, TumorCells, CulturedHumansNeurofibromatosis 1Peripheral Nervous System NeoplasmsSchwann CellsSOX9 Transcription FactorBiomarkers, TumorSOX9 protein, humanSOX9 Transcription Factor

Identifiers

PMID20049725
PMCPMC3378132
OpenAlexW1882985910

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.