Evidence map›Paper›PMID 20048169›Full record

ArticleThe Journal of biological chemistry2010

Intra- and interdomain effects due to mutation of calcium-binding sites in calmodulin.

Liang-Wen Xiong, Quinn K Kleerekoper, Xu Wang, John A Putkey

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Molecular basis for a CaThe Journal of biological chemistry · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Liang-Wen XiongDepartment of Biochemistry and Molecular Biology and the Structural Biology Center, University of Texas, Houston Medical School, Houston, Texas 77030, USA.
Quinn K Kleerekoper
Xu Wang
John A Putkey
The University of Texas Health Science Center at Houston · US

Funding

Neural Models of Plasticity: Molecules to NetworksP01NS038310 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BYRNE, JOHN H · 1999 to 2009
$9.3M
Calcium-Dependent Protein RegulationR01GM069611 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI PUTKEY, JOHN ANTHONY · 2005 to 2008
$1.1M
NIGMS NIH HHS GM069611NIGMS NIH HHS R01 GM069611NINDS NIH HHS NS038310NINDS NIH HHS P01 NS038310
6 · The paper itself

Abstract

The IQ-motif protein PEP-19, binds to the C-domain of calmodulin (CaM) with significantly different k(on) and k(off) rates in the presence and absence of Ca(2+), which could play a role in defining the levels of free CaM during Ca(2+) transients. The initial goal of the current study was to determine whether Ca(2+) binding to sites III or IV in the C-domain of CaM was responsible for affecting the kinetics of binding PEP-19. EF-hand Ca(2+)-binding sites were selectively inactivated by the common strategy of changing Asp to Ala at the X-coordination position. Although Ca(2+) binding to both sites III and IV appeared necessary for native-like interactions with PEP-19, the data also indicated that the mutations caused undesirable structural alterations as evidenced by significant changes in amide chemical shifts for apoCaM. Mutations in the C-domain also affected chemical shifts in the unmodified N-domain, and altered the Ca(2+) binding properties of the N-domain. Conversion of Asp(93) to Ala caused the greatest structural perturbations, possibly due to the loss of stabilizing hydrogen bonds between the side chain of Asp(93) and backbone amides in apo loop III. Thus, although these mutations inhibit binding of Ca(2+), the mutated CaM may not be able to support potentially important native-like activity of the apoprotein. This should be taken into account when designing CaM mutants for expression in cell culture.

Indexed as

CalmodulinAlanineAnimalsAspartic AcidBinding SitesCalciumFluorescence Resonance Energy TransferHydrogen BondingMammalsMutagenesis, Site-DirectedNerve Tissue ProteinsNuclear Magnetic Resonance, BiomolecularProtein Structure, TertiaryStructure-Activity RelationshipAlanineAspartic AcidCalciumCalmodulinNerve Tissue ProteinsPcp4 protein, mouse

Identifiers

PMID20048169
PMCPMC2832960
OpenAlexW2001896124

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.