Evidence map›Paper›PMID 20047970›Full record

ArticleNucleic acids research2010

Site-specific chromosomal integration of large synthetic constructs.

Thomas E Kuhlman, Edward C Cox

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 264 citations in OpenAlex.

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  12. Reliable Genomic Integration Sites inACS synthetic biology · 2024
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  15. Simultaneous glucose and xylose utilization by anApplied and environmental microbiology · 2024
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  17. EngineeringMicroorganisms · 2023
    Article
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54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Thomas E KuhlmanDepartment of Molecular Biology, Princeton University, Washington Road, Princeton, NJ 08544-1014 USA. tkuhlman@princeton.edu
Edward C Cox
Princeton University · US

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
CAAX Processing and Cell Signaling in DictyosteliumR01GM078591 · NIGMS · PRINCETON UNIVERSITY · PI COX, EDWARD C · 2008 to 2011
$1.5M
Howard Hughes Medical Institute 52005884NIGMS NIH HHS GM071508NIGMS NIH HHS GM078591
6 · The paper itself

Abstract

We have developed an effective, easy-to-use two-step system for the site-directed insertion of large genetic constructs into arbitrary positions in the Escherichia coli chromosome. The system uses lambda-Red mediated recombineering accompanied by the introduction of double-strand DNA breaks in the chromosome and a donor plasmid bearing the desired insertion fragment. Our method, in contrast to existing recombineering or phage-derived insertion methods, allows for the insertion of very large fragments into any desired location and in any orientation. We demonstrate this method by inserting a 7-kb fragment consisting of a venus-tagged lac repressor gene along with a target lacZ reporter into six unique sites distributed symmetrically about the chromosome. We also demonstrate the universality and repeatability of the method by separately inserting the lac repressor gene and the lacZ target into the chromosome at separate locations around the chromosome via repeated application of the protocol.

Indexed as

Chromosomes, BacterialRecombination, GeneticBase SequenceEscherichia coliGene TargetingGenetic EngineeringMolecular Sequence DataPlasmids

Identifiers

PMID20047970
PMCPMC2847246
OpenAlexW2106673630

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.