Evidence map›Paper›PMID 20045732›Full record

ReviewMethods (San Diego, Calif.)2010

The use of antisense oligonucleotides in Xenopus oocytes.

Alissa M Hulstrand, Patricia N Schneider, Douglas W Houston

Abstract readReview
In one paragraph

Review in Methods (San Diego, Calif.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Article
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  9. Article
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  11. Article
  12. RNAi in Xenopus: look before you leap.Genes & development · 2011
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Alissa M HulstrandThe University of Iowa, Department of Biology, 257 BB, Iowa City, IA 52242-1324, USA.
Patricia N Schneider
Douglas W Houston
University of Iowa · US

Funding

Localized mRNAs in vertebrate axis formationR01GM083999 · NIGMS · UNIVERSITY OF IOWA · PI HOUSTON, DOUGLAS W · 2008 to 2016
$2.6M
NIGMS NIH HHS 5R01 GM083999-02NIGMS NIH HHS R01 GM083999
6 · The paper itself

Abstract

The ability to manipulate gene expression in Xenopus oocytes and then generate fertilized embryos by transfer into host females has made it possible to rapidly characterize maternal signaling pathways in vertebrate development. Maternal mRNAs in particular can be efficiently depleted using antisense deoxyoligonucleotides (oligos), mediated by endogenous RNase-H activity. Since the microinjection of antisense reagents or mRNAs into eggs after fertilization often fails to affect maternal signaling pathways, mRNA depletion in the Xenopus oocyte is uniquely suited to assessing maternal functions. In this review, we highlight the advantages of using antisense in Xenopus oocytes and describe basic methods for designing and choosing effective oligos. We also summarize the procedures for fertilizing cultured oocytes by host-transfer and interpreting the specificity of antisense effects. Although these methods can be technically demanding, the use of antisense in oocytes can be used to address biological questions that are intractable in other experimental settings.

Indexed as

Animalsbeta CateninCulture MediaDNAFemaleFertilizationModels, GeneticOligonucleotidesOligonucleotides, AntisenseOocytesPhenotypeRNA, MessengerTime FactorsXenopusXenopus laevisbeta CateninCulture MediaDNAOligonucleotidesOligonucleotides, AntisenseRNA, Messenger

Identifiers

PMID20045732
PMCPMC2868083
OpenAlexW2139898476

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.