Evidence map›Paper›PMID 20044350›Full record

ArticleNucleic acids research2010

RepD-mediated recruitment of PcrA helicase at the Staphylococcus aureus pC221 plasmid replication origin, oriD.

C Machón, G P Lynch, N H Thomson, D J Scott, C D Thomas, P Soultanas

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.2field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. The SF1 helicase encoded by the archaeal plasmid pTN2 of Thermococcus nautili.Extremophiles : life under extreme conditions · 2014
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

C MachónCentre for Biomolecular Sciences, School of Chemistry, University of Nottingham University Park, Nottingham NG7 2RD, UK.
G P Lynch
N H Thomson
D J Scott
C D Thomas
P Soultanas
University of Leeds · GBUniversity of Nottingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/D526502/1Biotechnology and Biological Sciences Research Council BB/E004717/1Biotechnology and Biological Sciences Research Council BB/E006450/1Biotechnology and Biological Sciences Research Council BBF0111561
6 · The paper itself

Abstract

Plasmid encoded replication initiation (Rep) proteins recruit host helicases to plasmid replication origins. Previously, we showed that RepD recruits directionally the PcrA helicase to the pC221 oriD, remains associated with it, and increases its processivity during plasmid unwinding. Here we show that RepD forms a complex extending upstream and downstream of the core oriD. Binding of RepD causes remodelling of a region upstream from the core oriD forming a 'landing pad' for the PcrA. PcrA is recruited by this extended RepD-DNA complex via an interaction with RepD at this upstream site. PcrA appears to have weak affinity for this region even in the absence of RepD. Upon binding of ADPNP (non-hydrolysable analogue of ATP), by PcrA, a conformational rearrangement of the RepD-PcrA-ATP initiation complex confines it strictly within the boundaries of the core oriD. We conclude that RepD-mediated recruitment of PcrA at oriD is a three step process. First, an extended RepD-oriD complex includes a region upstream from the core oriD; second, the PcrA is recruited to this upstream region and thirdly upon ATP-binding PcrA relocates within the core oriD.

Indexed as

Replication OriginAdenosine TriphosphateBacterial ProteinsBase SequenceDeoxyribonuclease IDNA, BacterialDNA-Binding ProteinsDNA FootprintingDNA HelicasesExodeoxyribonucleasesMolecular Sequence DataNucleic Acid ConformationPlasmidsProtein BindingStaphylococcus aureusAdenosine TriphosphateBacterial ProteinsDeoxyribonuclease IDNA, BacterialDNA-Binding ProteinsDNA Helicasesexodeoxyribonuclease IIIExodeoxyribonucleasespcrA protein, BacteriaRepD protein, Staphylococcus aureus

Identifiers

PMID20044350
PMCPMC2847222
OpenAlexW2170044695

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.