Evidence map›Paper›PMID 20043651›Full record

ArticleThe journal of physical chemistry. B2010

Real-time partitioning of octadecyl rhodamine B into bead-supported lipid bilayer membranes revealing quantitative differences in saturable binding sites in DOPC and 1:1:1 DOPC/SM/cholesterol membranes.

Tione Buranda, Yang Wu, Dominique Perez, Alexandre Chigaev, Larry A Sklar

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  3. Article
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  5. Phase Composition Control in Microsphere-Supported Biomembrane Systems.Langmuir : the ACS journal of surfaces and colloids · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Tione BurandaDepartment of Pathology and Cancer Center, University of New Mexico School of Medicine, Albuquerque, New Mexico 87131, USA. Buranda@unm.edu
Yang Wu
Dominique Perez
Alexandre Chigaev
Larry A Sklar
New Mexico Cancer Center · USUniversity of New Mexico · US

Funding

New Mexico Molecular Libraries Screening Center(RMI)U54MH074425 · NIMH · UNIVERSITY OF NEW MEXICO · PI SKLAR, LARRY A. · 2005 to 2008
$10.0M
Force, Conformation & Affinity in VLA-4 and LFA-1 AdhesionR01HL081062 · NHLBI · UNIVERSITY OF NEW MEXICO · PI SKLAR, LARRY A. · 2007 to 2011
$2.4M
Membrane Organization in Cell Signaling and AdhesionK25AI060036 · NIAID · UNIVERSITY OF NEW MEXICO · PI BURANDA, TIONE · 2004 to 2008
$704k
NHLBI NIH HHS HL081062NHLBI NIH HHS R01 HL081062NIAID NIH HHS K25 AI060036NIAID NIH HHS K25AI60036NIMH NIH HHS U54 MH074425NIMH NIH HHS U54MH074425
6 · The paper itself

Abstract

Quantitative analysis of the staining of cell membranes with the cationic amphiphile, octadecyl rhodamine B (R18), is confounded by probe aggregation and changes to the probes' absorption cross section and emission quantum yield. In this paper, flow cytometry, quantum-dot-based fluorescence calibration beads, and FRET were used to examine real-time transfer of R18 from water to two limiting models of the cellular plasma membrane, namely, a single-component disordered membrane, dioleoyl-L-alpha-phosphatidylcholine (DOPC), and a ternary mixture of DOPC, cholesterol, and sphingomyelin (DSC) membranes, reconstituted on spherical and monodisperse glass beads (lipobeads). The quenching of R18 was analyzed as the probe concentration was raised from 0 to 10 mol % in membranes. The data show a > 2-fold enhancement in the quenching level of the probes that were reconstituted in DSC relative to DOPC membranes at the highest concentration of R18. We have parametrized the propagation of concentration-dependent quenching as a function of real-time binding of R18 to lipobeads. In this way, phenomenological kinetics of serum-albumin-mediated transfer of R18 from the aqueous phase to DOPC and DSC membranes could be evaluated under optimal conditions where the critical aggregation concentration (CAC) of the probe is defined as 14 nM. The mass action kinetics of association of R18 with DOPC and DSC lipobeads are shown to be similar. However, the saturable capacity for accepting exogenous probes is found to be 37% higher in DOPC relative to that for DSC membranes. The difference is comparable to the disparity in the average molecular areas of DOPC and DSC membranes. Finally, this analysis shows little difference in the spectral overlap integrals of the emission spectrum of a fluorescein derivative donor and the absorption spectrum of either monomeric or simulated spectrum of dimeric R18. This approach represents a first step toward a nanoscale probing of membrane heterogeneity in living cells by analyzing differential local FRET among sites of unique receptor expression in living cells.

Indexed as

MicrospheresBinding SitesCalibrationCell LineCell MembraneCholesterolFluorescence Resonance Energy TransferHumansLipid BilayersMicroscopy, ConfocalPhosphatidylcholinesQuantum DotsRhodaminesSerum AlbuminSphingomyelinsTime Factors1,2-oleoylphosphatidylcholineCholesterolLipid Bilayersoctadecylrhodamine BPhosphatidylcholinesRhodaminesSerum AlbuminSphingomyelins

Identifiers

PMID20043651
PMCPMC2841692
OpenAlexW2049435559

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.