Evidence map›Paper›PMID 20042621›Full record

ArticleJournal of clinical microbiology2010

Prevalence of the sodC gene in nontypeable Haemophilus influenzae and Haemophilus haemolyticus by microarray-based hybridization.

Kirk W McCrea, Myron L Wang, Jingping Xie, Sara A Sandstedt, Gregg S Davis, Joseph H Lee, Carl F Marrs, Janet R Gilsdorf

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Haemophilus haemolyticus isolates causing clinical disease.Journal of clinical microbiology · 2012
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kirk W McCreaDepartment of Pediatrics, University of Michigan, Ann Arbor, Michigan 48109-0244, USA. sigmb@med.umich.edu
Myron L Wang
Jingping Xie
Sara A Sandstedt
Gregg S Davis
Joseph H Lee
Carl F Marrs
Janet R Gilsdorf

Funding

H. influenzae Genes Associated with Acute Otitis MediaR01DC005840 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GILSDORF, JANET R · 2002 to 2010
$3.6M
NHLBI NIH HHS HL08393NIDCD NIH HHS DC05840NIDCD NIH HHS R01 DC005840
6 · The paper itself

Abstract

The sodC gene has been reported to be a useful marker for differentiating nontypeable (NT) Haemophilus influenzae from Haemophilus haemolyticus in respiratory-tract samples, but discrepancies exist as to the prevalence of sodC in NT H. influenzae. Therefore, we used a microarray-based, "library-on-a-slide" method to differentiate the species and found that 21 of 169 (12.4%) NT H. influenzae strains and all 110 (100%) H. haemolyticus strains possessed the sodC gene. Multilocus sequence analysis confirmed that the 21 NT H. influenzae strains were H. influenzae and not H. haemolyticus. An inactive sodC gene has been reported in encapsulated H. influenzae strains belonging to phylogenetic division II. Capsule-specific Southern hybridization and PCR and a lack of copper/zinc-cofactored superoxide dismutase (CuZnSOD) expression indicated that 6 of the 21 sodC-containing NT H. influenzae strains in our study were likely capsule-deficient mutants belonging to phylogenetic division II. DNA sequence comparisons of the 21 H. influenzae sodC genes with sodC from H. haemolyticus or encapsulated H. influenzae demonstrated that the sodC genes of the six H. influenzae capsule-deficient mutants were, on average, 99% identical to sodC from encapsulated H. influenzae but only 85% identical to sodC from H. haemolyticus. The sodC genes from 2/15 NT H. influenzae strains were similarly more closely related to sodC from encapsulated strains, while sodC genes from 13 NT H. influenzae strains were almost 95% identical to sodC genes from H. haemolyticus, suggesting the possibility of interspecies recombination in these strains. In summary, this study demonstrates that sodC is not completely absent (9.2%) in true NT H. influenzae strains.

Indexed as

Microarray AnalysisBacterial ProteinsCluster AnalysisDNA, BacterialHaemophilusMolecular Sequence DataPhylogenyPrevalenceSequence Analysis, DNASequence Homology, Amino AcidSuperoxide DismutaseBacterial ProteinsDNA, BacterialSuperoxide Dismutase

Identifiers

PMID20042621
PMCPMC2832428

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.