Evidence map›Paper›PMID 20042108›Full record

ArticleBMC biochemistry2009

The acidic domains of the Toc159 chloroplast preprotein receptor family are intrinsically disordered protein domains.

Lynn Gl Richardson, Masoud Jelokhani-Niaraki, Matthew D Smith

Abstract read
In one paragraph

Article in BMC biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Lynn Gl RichardsonDepartment of Biology, Wilfrid Laurier University, Waterloo, ON N2L 3C5, Canada. lrichard@uoguelph.ca
Masoud Jelokhani-Niaraki
Matthew D Smith

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Toc159 family of proteins serve as receptors for chloroplast-destined preproteins. They directly bind to transit peptides, and exhibit preprotein substrate selectivity conferred by an unknown mechanism. The Toc159 receptors each include three domains: C-terminal membrane, central GTPase, and N-terminal acidic (A-) domains. Although the function(s) of the A-domain remains largely unknown, the amino acid sequences are most variable within these domains, suggesting they may contribute to the functional specificity of the receptors.

resultsThe physicochemical properties of the A-domains are characteristic of intrinsically disordered proteins (IDPs). Using CD spectroscopy we show that the A-domains of two Arabidopsis Toc159 family members (atToc132 and atToc159) are disordered at physiological pH and temperature and undergo conformational changes at temperature and pH extremes that are characteristic of IDPs.

conclusionsIdentification of the A-domains as IDPs will be important for determining their precise function(s), and suggests a role in protein-protein interactions, which may explain how these proteins serve as receptors for such a wide variety of preprotein substrates.

Indexed as

ArabidopsisArabidopsis ProteinsChloroplastsCircular DichroismGTP PhosphohydrolasesHydrogen-Ion ConcentrationMembrane ProteinsProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsTemperatureTrifluoroethanolArabidopsis ProteinsGTP PhosphohydrolasesMembrane ProteinsRecombinant ProteinsTOC159 protein, ArabidopsisTrifluoroethanol

Identifiers

PMID20042108
PMCPMC2805684

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.