Evidence map›Paper›PMID 20041154›Full record

ArticlePloS one2009

Identification and developmental expression of Xenopus laevis SUMO proteases.

Yonggang Wang, Debaditya Mukhopadhyay, Smita Mathew, Takashi Hasebe, Rachel A Heimeier, Yoshiaki Azuma, Nagamalleswari Kolli, Yun-Bo Shi, Keith D Wilkinson, Mary Dasso

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. The pharmacokinetics of enrofloxacin in adult African clawed frogs (Xenopus laevis).Journal of the American Association for Laboratory Animal Science : JAALAS · 2010
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yonggang WangLaboratory of Gene Regulation and Development, National Institute of Child Health and Human Development, Bethesda, Maryland, United States of America.
Debaditya Mukhopadhyay
Smita Mathew
Takashi Hasebe
Rachel A Heimeier
Yoshiaki Azuma
Nagamalleswari Kolli
Yun-Bo Shi
Keith D Wilkinson
Mary Dasso
Eunice Kennedy Shriver National Institute of Child Health and Human Development · USEmory University · US

Funding

Molecular mechanism of thyroid hormone receptor function during metamorphosisZIAHD001901 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI SHI, YUN-BO · 2009 to 2025
$13.1M
SUMO family Ubiquitin-like Modifiers In Higher EukaryotesZIAHD001902 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI DASSO, MARY C. · 2009 to 2021
$6.3M
Functions of Ub-like Proteins &Processing ProteasesR01GM066355 · NIGMS · EMORY UNIVERSITY · PI WILKINSON, KEITH D · 2002 to 2009
$2.5M
Intramural NIH HHSNIGMS NIH HHS 5R01GM066355NIGMS NIH HHS R01 GM066355
6 · The paper itself

Abstract

SUMO proteins are small ubiquitin-related modifiers. All SUMOs are synthesized as propeptides that are post-translationally cleaved prior to conjugation. After processing, SUMOs become covalently conjugated to cellular targets through a pathway that is similar to ubiquitination. Ubiquitin like protein proteases/Sentrin specific proteases (Ulp/SENPs) mediate both processing and deconjugation of SUMOs. The action of Ulp/SENPs makes SUMOylation a highly dynamic post-translational modification. To investigate how Ulp/SENPs are regulated in a developmental context, we isolated and characterized all Ulp/SENPs in Xenopus laevis. Xenopus possess homologues of mammalian SENP3, 5, 6 and 7. All of these enzymes reacted with HA-tagged vinyl sulfone derivatives of SUMO-2 (HA-SU2-VS) but not SUMO-1 (HA-SU1-VS), suggesting that they act primarily on SUMO-2 and -3. In contrast, Xenopus possess a single member of the SENP1/SENP2 subfamily of Ulp/SENPs, most closely related to mammalian SENP1. Xenopus SENP1 reacted with HA-SU1-VS and HA-SU2-VS, suggesting that it acts on all SUMO paralogues. We analyzed the mRNA and protein levels for each of the Ulp/SENPs through development; we found that they show distinct patterns of expression that may involve both transcriptional and post-transcriptional regulation. Finally, we have characterized the developmental function of the most abundant Ulp/SENP found within Xenopus eggs, SENP3. Depletion of SENP3 using morpholino antisense oligonucleotides (morpholinos) caused accumulation of high molecular weight SUMO-2/3 conjugated species, defects in developing embryos and changes in the expression of some genes regulated by the transforming growth factor beta (TGF-beta) pathway. These findings collectively indicate that SUMO proteases are both highly regulated and essential for normal development.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell ExtractsEmbryo, NonmammalianGene Knockdown TechniquesOvumPeptide HydrolasesReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSequence Homology, Nucleic AcidSignal TransductionSmall Ubiquitin-Related Modifier ProteinsSubstrate SpecificityTransforming Growth Factor betaXenopus laevisXenopus ProteinsCell ExtractsPeptide HydrolasesRNA, MessengerSmall Ubiquitin-Related Modifier ProteinsTransforming Growth Factor betaXenopus Proteins

Identifiers

PMID20041154
PMCPMC2794540
OpenAlexW1965973385

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.