Evidence map›Paper›PMID 20038639›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2010

Phylogenetic and functional analysis identifies Ets-1 as a novel regulator of the Th2 cytokine gene locus.

Jannine M Strempel, Roland Grenningloh, I-Cheng Ho, Donata Vercelli

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq.Molecular therapy : the journal of the American Society of Gene Therapy · 2020
    Article
  5. Article
  6. Article
  7. Review
  8. STAT6 regulates natural helper cell proliferation during lung inflammation initiated by Alternaria.American journal of physiology. Lung cellular and molecular physiology · 2012
    Article
  9. Article
  10. Ets-1 maintains IL-7 receptor expression in peripheral T cells.Journal of immunology (Baltimore, Md. : 1950) · 2011
    Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jannine M StrempelFunctional Genomics Laboratory, Arizona Respiratory Center, Tucson, AZ 85719, USA.
Roland Grenningloh
I-Cheng Ho
Donata Vercelli
Brigham and Women's Hospital · USUniversity of Arizona · US

Funding

HUMAN IL-13 GENE REGULATION AND IMPACT OF POLYMORPHISMSR01HL066391 · NHLBI · UNIVERSITY OF ARIZONA · PI VERCELLI, DONATA · 2000 to 2014
$5.0M
NHLBI NIH HHS 5R01HL66391NHLBI NIH HHS R01 HL066391
6 · The paper itself

Abstract

The Th2 cytokine gene locus has emerged as a remarkable example of coordinated gene expression, the regulation of which seems to be rooted in an extensive array of cis-regulatory regions. Using a hypothesis-generating computational approach that integrated multispecies (n = 11) sequence comparisons with algorithm-based transcription factor binding-site predictions, we sought to identify evolutionarily conserved noncoding regions (ECRs) and motifs shared among them, which may underlie coregulation. Twenty-two transcription factor families were predicted to have binding sites in at least two Th2 ECRs. The ranking of these shared motifs according to their distribution and relative frequency pointed to a regulatory hierarchy among the transcription factor families. GATA sites were the most prevalent and widely distributed, consistent with the known role of GATA3 as a Th2 master switch. Unexpectedly, sites for ETS-domain proteins were also predicted within several Th2 ECRs and the majority of these sites were found to support Ets-1 binding in vitro and in vivo. Of note, the expression of all three Th2 cytokines (IL-5, -13, and -4) was significantly and selectively decreased in Th2 cells generated from Ets-1-deficient mice. Collectively, these data suggest that Ets-1 contributes to Th2 cytokine gene regulation by interacting with multiple cis-regulatory regions throughout the Th2 locus.

Indexed as

PhylogenyAnimalsCattleChickensConserved SequenceCytokinesDogsEvolution, MolecularFemaleGene Expression RegulationGenetic LociHumansMiceMice, Inbred C57BLMice, KnockoutProto-Oncogene Protein c-ets-1CytokinesEts1 protein, mouseProto-Oncogene Protein c-ets-1

Identifiers

PMID20038639
PMCPMC2809820
OpenAlexW2145248960

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.