Evidence map›Paper›PMID 20038529›Full record

ArticleMolecular and cellular biology2010

Mutational analysis of the poly(ADP-ribosyl)ation sites of the transcription factor CTCF provides an insight into the mechanism of its regulation by poly(ADP-ribosyl)ation.

Dawn Farrar, Sushma Rai, Igor Chernukhin, Maja Jagodic, Yoko Ito, Samer Yammine, Rolf Ohlsson, Adele Murrell, Elena Klenova

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 86 citations in OpenAlex.

  1. Re-establishment of TAD boundary organization during DNA replication.bioRxiv : the preprint server for biology · 2026
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  19. CGGBP1 regulates CTCF occupancy at repeats.Epigenetics & chromatin · 2019
    Article
  20. Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Dawn FarrarDepartment of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, Essex CO4 3SQ, United Kingdom.
Sushma Rai
Igor Chernukhin
Maja Jagodic
Yoko Ito
Samer Yammine
Rolf Ohlsson
Adele Murrell
Elena Klenova
University of Essex · GBKarolinska Institutet · SE

Funding

Breast Cancer Now 2007MAYSP13Cancer Research UKMedical Research Council G0401088
6 · The paper itself

Abstract

Poly(ADP-ribosyl)ation of the conserved multifunctional transcription factor CTCF was previously identified as important to maintain CTCF insulator and chromatin barrier functions. However, the molecular mechanism of this regulation and also the necessity of this modification for other CTCF functions remain unknown. In this study, we identified potential sites of poly(ADP-ribosyl)ation within the N-terminal domain of CTCF and generated a mutant deficient in poly(ADP-ribosyl)ation. Using this CTCF mutant, we demonstrated the requirement of poly(ADP-ribosyl)ation for optimal CTCF function in transcriptional activation of the p19ARF promoter and inhibition of cell proliferation. By using a newly generated isogenic insulator reporter cell line, the CTCF insulator function at the mouse Igf2-H19 imprinting control region (ICR) was found to be compromised by the CTCF mutation. The association and simultaneous presence of PARP-1 and CTCF at the ICR, confirmed by single and serial chromatin immunoprecipitation assays, were found to be independent of CTCF poly(ADP-ribosyl)ation. These results suggest a model of CTCF regulation by poly(ADP-ribosyl)ation whereby CTCF and PARP-1 form functional complexes at sites along the DNA, producing a dynamic reversible modification of CTCF. By using bioinformatics tools, numerous sites of CTCF and PARP-1 colocalization were demonstrated, suggesting that such regulation of CTCF may take place at the genome level.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsBase SequenceBinding SitesCCCTC-Binding FactorCell LineCell ProliferationDNA PrimersGenomic ImprintingHeLa CellsHumansHybrid CellsInsulin-Like Growth Factor IIMiceMolecular Sequence DataCCCTC-Binding FactorCTCF protein, humanCtcf protein, mouseDNA PrimersH19 long non-coding RNAIGF2 protein, mouseInsulin-Like Growth Factor IIPARP1 protein, humanPoly Adenosine Diphosphate RibosePoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesRecombinant ProteinsRepressor ProteinsRNA, Long NoncodingRNA, Untranslated

Identifiers

PMID20038529
PMCPMC2820893
OpenAlexW2170374607

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.