Evidence map›Paper›PMID 20037157›Full record

ArticleThe Journal of biological chemistry2010

Role of transmembrane domain 4 in ligand permeation by Crithidia fasciculata equilibrative nucleoside transporter 2 (CfNT2).

Cassandra S Arendt, Buddy Ullman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Cassandra S ArendtSchool of Pharmacy, Pacific University Oregon, Hillsboro, Oregon 97123, USA. csarendt@pacificu.edu
Buddy Ullman
Oregon Health & Science University · USPacific University Oregon · US

Funding

Purine Nucleoside/Nucleobase Transporters in LeishmaniaR01AI044138 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI LANDFEAR, SCOTT M · 1999 to 2014
$4.6M
GENETIC ANALYSIS OF PURINE METABOLISM IN LEISHMANIA DONOR37AI023682 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI ULLMAN, BUDDY · 1998 to 2007
$2.7M
GENETICS OF PURINE METABOLISM IN LEISHMANIA DONOVANIR01AI023682 · NIAID · UNIVERSITY OF KENTUCKY · PI ULLMAN, BUDDY · 1985 to 2013
$2.0M
NIAID NIH HHS AI023682NIAID NIH HHS AI044138NIAID NIH HHS R01 AI023682NIAID NIH HHS R01 AI044138NIAID NIH HHS R37 AI023682
6 · The paper itself

Abstract

Equilibrative nucleoside transporters play essential roles in nutrient uptake, cardiovascular and renal function, and purine analog drug chemotherapies. Limited structural information is available for this family of transporters; however, residues in transmembrane domains 1, 2, 4, and 5 appear to be important for ligand and inhibitor binding. In order to identify regions of the transporter that are important for ligand specificity, a genetic selection for mutants of the inosine-guanosine-specific Crithidia fasciculata nucleoside transporter 2 (CfNT2) that had gained the ability to transport adenosine was carried out in the yeast Saccharomyces cerevisiae. Nearly all positive clones from the genetic selection carried mutations at lysine 155 in transmembrane domain 4, highlighting lysine 155 as a pivotal residue governing the ligand specificity of CfNT2. Mutation of lysine 155 to asparagine conferred affinity for adenosine on the mutant transporter at the expense of inosine and guanosine affinity due to weakened contacts to the purine ring of the ligand. Following systematic cysteine-scanning mutagenesis, thiol-specific modification of several positions within transmembrane domain 4 was found to interfere with inosine transport capability, indicating that this helix lines the water-filled ligand translocation channel. Additionally, the pattern of modification of transmembrane domain 4 suggested that it may deviate from helicity in the vicinity of residue 155. Position 155 was also protected from modification in the presence of ligand, suggesting that lysine 155 is in or near the ligand binding site. Transmembrane domain 4 and particularly lysine 155 appear to play key roles in ligand discrimination and translocation by CfNT2.

Indexed as

Binding SitesBiological TransportCrithidia fasciculataEquilibrative-Nucleoside Transporter 2LigandsMutationProtein ConformationSaccharomyces cerevisiaeEquilibrative-Nucleoside Transporter 2Ligands

Identifiers

PMID20037157
PMCPMC2825396
OpenAlexW1988703123

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.