ReviewCurrent opinion in plant biology2010
Omics meet networks - using systems approaches to infer regulatory networks in plants.
Review in Current opinion in plant biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
52 citing papers in PubMed, 142 citations in OpenAlex.
- Brassinosteroid gene regulatory networks at cellular resolution in theScience (New York, N.Y.) · 2023Article
- Review
- Transcriptome Meta-Analysis Associated Targeting Hub Genes and Pathways of Drought and Salt Stress Responses in Cotton (Frontiers in plant science · 2022Article
- OMICs, Epigenetics, and Genome Editing Techniques for Food and Nutritional Security.Plants (Basel, Switzerland) · 2021Review
- Systems biology for crop improvement.The plant genome · 2021Review
- Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides.BMC plant biology · 2021Article
- Integrated Metabolomics and Transcriptome Analysis of Flavonoid Biosynthesis in Safflower (Frontiers in plant science · 2021Article
- Identification of a New Giant Emrbryo Allele, and Integrated Transcriptomics and Metabolomics Analysis of Giant Embryo Development in Rice.Frontiers in plant science · 2021Article
- Network-based approaches for understanding gene regulation and function in plants.The Plant journal : for cell and molecular biology · 2020Review
- Metabolome and transcriptome analyses reveal chlorophyll and anthocyanin metabolism pathway associated with cucumber fruit skin color.BMC plant biology · 2020Article
- Identifying the Salient Genes in Microarray Data: A Novel Game Theoretic Model for the Co-Expression Network.Diagnostics (Basel, Switzerland) · 2020Article
- Integrated Omics Analyses Identify Key Pathways Involved in Petiole Rigidity Formation in Sacred Lotus.International journal of molecular sciences · 2020Article
- Classification and Computational Analysis ofFrontiers in genetics · 2020Article
- Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics.BMC genomics · 2019Article
- Identification of drought responsive proteins and related proteomic QTLs in barley.Journal of experimental botany · 2019Article
- Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (The Plant cell · 2019Article
- Combined Analysis of the Fruit Metabolome and Transcriptome Reveals Candidate Genes Involved in Flavonoid Biosynthesis in Actinidia arguta.International journal of molecular sciences · 2018Article
- Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions.Methods in molecular biology (Clifton, N.J.) · 2018Article
- Co-expression Gene Network Analysis and Functional Module Identification in Bamboo Growth and Development.Frontiers in genetics · 2018Article
- Differentiated transcriptional signatures in the maize landraces of Chiapas, Mexico.BMC genomics · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 1 institution in 1 country.
Funding
Abstract
Many genomic-scale datasets in plants have been generated over the last few years. This substantial achievement has led to impressive progress, including some of the most detailed molecular maps in any multicellular organism. Networks and pathways have been reconstructed using transcriptome, genome-wide transcription factor binding, proteome and metabolome data, and subsequently used to infer functional interactions among genes, proteins, and metabolites. However, more sophisticated systems biology approaches are needed to integrate different omics datasets. Ultimately, the integration of diverse and massive datasets into coherent models will improve our understanding of the molecular networks that underlie biological processes.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.